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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_00676.1_g00016.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
GRF |
Protein Properties |
Length: 390aa MW: 43566.8 Da PI: 8.5374 |
Description |
GRF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_00676.1_g00016.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRC | 73.6 | 2.2e-23 | 76 | 120 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45
d+epgrCrRtDGKkWRC ++++ ++k+CErH+hrgr+rsrk++e+
Sme2.5_00676.1_g00016.1 76 DPEPGRCRRTDGKKWRCAKDAYLDSKYCERHMHRGRNRSRKHVES 120
79****************************************986 PP
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2 | QLQ | 64 | 3.9e-22 | 15 | 50 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
+FTa Q+q+L++Q+++yKyL+a++PvP++L+++i++
Sme2.5_00676.1_g00016.1 15 PFTAVQWQELEHQAMIYKYLVAGVPVPADLVVPIRR 50
9*********************************86 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 390 aa
Download sequence Send
to blast |
MSTAAETVAE GYRTPFTAVQ WQELEHQAMI YKYLVAGVPV PADLVVPIRR SFEPISARFC 60 HHPSLGYYSY YGKKFDPEPG RCRRTDGKKW RCAKDAYLDS KYCERHMHRG RNRSRKHVES 120 QSTAPSLLTS VSHNTTGSSK TSGNFQRSSS GSFQNTPLYS AANSEGPSYG SATTKMQTEP 180 TTYAIDFKGY GYFHGMASDE QNFSFEASAG TTSLGMGSNT DSMWCLMPPQ LPSNPMVKPK 240 NDSQLPDSSQ PIRMTNPFEP MNDATISGQQ HQHCFFGSDI GSPGTVKQEQ RSMRPFFDEW 300 PTTKESWSNL DDDGSNKNNF CTPQLSISIP MTPPDFSSRS SCSPNGVSGA ALSRQILIST 360 SRWIEPWPRM SKLPRKLHEN ILVPLHVFMV
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975451 | 1e-178 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |