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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_00661.1_g00012.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
GRF |
Protein Properties |
Length: 375aa MW: 41266.8 Da PI: 7.5014 |
Description |
GRF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_00661.1_g00012.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRC | 75.2 | 6.8e-24 | 116 | 159 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44
d+ep+rC+RtDGKkWRCsr+v +++k+CErH h+++ rsrk++e
Sme2.5_00661.1_g00012.1 116 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHAHKSKPRSRKPVE 159
79***************************************987 PP
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2 | QLQ | 36.8 | 1.2e-13 | 62 | 95 | 2 | 35 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35
+FTa+Qlq++ +Q + Ky++a++PvPp+Ll+++
Sme2.5_00661.1_g00012.1 62 PFTASQLQEFQRQSVICKYIMASMPVPPQLLLPL 95
9*******************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 375 aa
Download sequence Send
to blast |
MENSELLDLK MKSSEAYKRS MFMAPSSFSP CGKETSDDGG SGSFVGAALS SRACARGKAQ 60 APFTASQLQE FQRQSVICKY IMASMPVPPQ LLLPLPTHPS PPQSNSLDLK FSSGSDPEPW 120 RCKRTDGKKW RCSRDVAPDQ KYCERHAHKS KPRSRKPVEI HTNRHPPPPK SNSNHHSFHF 180 PTVQLSADQT RCIEWLGRAD RSGTIPHQQL MQSSSGMGFN NDQNTRNSPA FQVQDEYPMN 240 FNQYMSNSTS GDDSLQARGT TRDLMDAWPK DRLITNNGSF TSLTLSMSGW NRGMDDDNEH 300 TIGMLDSETS GDEVLRSQWL NPVSWMSSTA PGGPLGEALC LGNASSLPSP HGYSNSSATR 360 SCSFGSCENA LDFIG
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP009261 | 4e-86 | AP009261.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0005L01, complete sequence. |
GenBank | AP009280 | 4e-86 | AP009280.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0201M14, complete sequence. |
GenBank | HG975520 | 4e-86 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |