PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00654.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 195aa MW: 22835 Da PI: 6.0444 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 24.1 | 9.7e-08 | 6 | 100 | 32 | 128 |
NAM 32 evikevdiykv.ePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksg.yWkatgkdkevlskkgelvglkktLvfy 109 + i+ vd+y +P++L + + +++++ yfF+k +kk +gk+ nr++ g Wk g+++glkkt+ f Sme2.5_00654.1_g00001.1 6 DDIPYVDLYGNkKPSELFQellcseEKTNNDHVNYFFTKLKKKFVKGKNINRSIVGGdKWK------------GSVIGLKKTFRFD 79 5588899986548***964466553222234455******************766441466............4579********9 PP NAM 110 ...kgrapkgektdWvmheyrl 128 +gr+ + + W+m+ey l Sme2.5_00654.1_g00001.1 80 eerSGRD-NEKIMYWIMKEYYL 100 4322333.336789******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 11.044 | 1 | 127 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.45E-12 | 6 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MHIEFDDIPY VDLYGNKKPS ELFQELLCSE EKTNNDHVNY FFTKLKKKFV KGKNINRSIV 60 GGDKWKGSVI GLKKTFRFDE ERSGRDNEKI MYWIMKEYYL DEDTMKVLRD SGEIRHEDYV 120 VCSIVKKVSL CKNSQDSPTK IDNIASDCHC GPDKKLIYAA EIWLLPTLNE SFKPLTDEDV 180 AIFDKPDPEY PHTYK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004237307.1 | 6e-76 | uncharacterized protein LOC101265124 | ||||
TrEMBL | A0A3Q7G1S3 | 1e-74 | A0A3Q7G1S3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g025760.1.1 | 2e-75 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3381 | 10 | 41 |