PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00641.1_g00007.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 350aa MW: 39410 Da PI: 7.4956

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00641.1_g00007.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.6	2e-52	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrF Ptdeel+v+yL++kv+g++++l ++i+evd+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkat Sme2.5_00641.1_g00007.1 14 LPPGFRFYPTDEELLVQYLCRKVAGDDFSL-QIIAEVDLYKFNPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKAT 98 79*************************9.89***********7777799*************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+dk ++s +g++vg+kk Lvfy g+apkg+kt+W+mheyrl Sme2.5_00641.1_g00007.1 99 GTDKVITS-EGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139 ***9.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-65	9	163	IPR003441	NAC domain
PROSITE profile	PS51005	60.035	14	163	IPR003441	NAC domain
Pfam	PF02365	4.0E-26	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MGVRETDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGDD FSLQIIAEVD LYKFNPWVLP 60 SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITSEGRK VGIKKALVFY 120 IGKAPKGTKT NWIMHEYRLS VPTTKSGSSS RLDDWVLCRI YKKNCPVQKA CSSDMQSKEM 180 SHGSSSSSSS QFDSMLEPLP EDRYFSLPTR NFQQDDNKLN LQQPSSENFD WATWGGFNSF 240 PELTTGNQAP AQVNQTPMLV NINQNHNNNN NMNNFTEFFA NPTALNFHGE VKFEGGVDQE 300 VESSVRAQRM NSVNPGFFPE NSTGFSHASS VPDPFGIRYP TQTVNMGFSG

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MGVRETDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGDD FSLQIIAEVD LYKFNPWVLP  60
SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITSEGRK VGIKKALVFY  120
IGKAPKGTKT NWIMHEYRLS VPTTKSGSSS RLDDWVLCRI YKKNCPVQKA CSSDMQSKEM  180
SHGSSSSSSS QFDSMLEPLP EDRYFSLPTR NFQQDDNKLN LQQPSSENFD WATWGGFNSF  240
PELTTGNQAP AQVNQTPMLV NINQNHNNNN NMNNFTEFFA NPTALNFHGE VKFEGGVDQE  300
VESSVRAQRM NSVNPGFFPE NSTGFSHASS VPDPFGIRYP TQTVNMGFSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-105	1	169	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-105	1	169	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-105	1	169	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-105	1	169	4	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-105	1	169	4	171	NAC domain-containing protein 19
4dul_B	1e-105	1	169	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001306107.1	0.0	JA2-like
Refseq	XP_015081066.1	0.0	NAC domain-containing protein 72-like
Swissprot	A0A3Q7HH64	0.0	JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBL	M1BP49	0.0	M1BP49_SOLTU; Uncharacterized protein
STRING	Solyc07g063410.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3122	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-110	NAC family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]