PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00636.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 615aa MW: 68910.8 Da PI: 6.5571 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.6 | 2.8e-20 | 58 | 113 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p+ ++r++L k+lgL+ qVk+WFqN+R+++k Sme2.5_00636.1_g00006.1 58 KKQYHRHTQHQIQELESFFKECPHPDDKQRKDLGKRLGLEPLQVKFWFQNKRTQMK 113 688999***********************************************998 PP | |||||||
2 | START | 212.9 | 1.2e-66 | 251 | 472 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS START 1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetl 76 ela +a++el+++a+ +ep+W s +n++e+ ++f+++ + ++ea+r+s+vv+ + ++lve+l+d++ qW+ + Sme2.5_00636.1_g00006.1 251 ELAVAAMEELIRLAQTGEPLWINHSsennnVALNEEEYARTFPRGIGpkslgLKSEASRESAVVIINYVNLVEILMDVN-QWTSFF 335 57899*****************99999999999***********999********************************.****** PP S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEE CS START 77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSg 151 + ka++lev+s+g galq+m+ae+q++splvp R+ +fvRy++q+g+g+w++vdvS+d+ ++ sv R++++pSg Sme2.5_00636.1_g00006.1 336 TgivsKATILEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHGDGSWAVVDVSLDNLRSS----SVSRCRRRPSG 417 *******************************************************************9985....58********* PP EEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 152 iliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +li++++ng+skvtw+ehv++++r +h+++r+lv sgla+gak+wvatl+rqce+ Sme2.5_00636.1_g00006.1 418 CLIQELPNGYSKVTWIEHVEVDDRAVHSIYRPLVDSGLAFGAKRWVATLERQCER 472 *****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.52E-19 | 43 | 115 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-21 | 46 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.649 | 55 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.6E-18 | 57 | 119 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.5E-18 | 58 | 113 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.10E-17 | 58 | 116 | No hit | No description |
PROSITE profile | PS50848 | 48.225 | 242 | 475 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.92E-41 | 242 | 474 | No hit | No description |
CDD | cd08875 | 3.16E-120 | 246 | 471 | No hit | No description |
SMART | SM00234 | 1.6E-65 | 251 | 472 | IPR002913 | START domain |
Pfam | PF01852 | 2.5E-56 | 252 | 472 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.1E-6 | 312 | 472 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.54E-12 | 490 | 606 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 615 aa Download sequence Send to blast |
MFQHNMFDSH NFLLDMTRKT PENELDLIRD DEFETKSGTD IMEAPSGDDQ DPNKRPKKKQ 60 YHRHTQHQIQ ELESFFKECP HPDDKQRKDL GKRLGLEPLQ VKFWFQNKRT QMKSQHERHE 120 NTQLRNENDK LRAENIRYKE ALTTATCPNC GGPAAIGEMS FDEQHLRIEN ARLREEIDRI 180 SGIAAKYVGK PMLNYPQLPS FGPPNRSSLE IGIAAANLGH PLGEMYANTS AGDLLRSISG 240 PTDADKPIII ELAVAAMEEL IRLAQTGEPL WINHSSENNN VALNEEEYAR TFPRGIGPKS 300 LGLKSEASRE SAVVIINYVN LVEILMDVNQ WTSFFTGIVS KATILEVLST GVAGNYNGAL 360 QVMTAEFQVP SPLVPTRENY FVRYCKQHGD GSWAVVDVSL DNLRSSSVSR CRRRPSGCLI 420 QELPNGYSKV TWIEHVEVDD RAVHSIYRPL VDSGLAFGAK RWVATLERQC ERLASVMASN 480 IPTGDVITSP EGRKSMLKLA ERMVMSFCAG VGASTAHTWT TLSGSGADDV RVMTRKSIDD 540 PGRPPGIVLS AATSFWMPVT TKRVFDFLRD ENSRNEWDIL SNGGLVQEMA HIANGRDSGN 600 SVSLLRVNEC EHHRH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016545426.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_016545427.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1 | ||||
Swissprot | Q8RWU4 | 0.0 | ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1 | ||||
TrEMBL | A0A1U8EDY4 | 0.0 | A0A1U8EDY4_CAPAN; Homeobox-leucine zipper protein MERISTEM L1 | ||||
TrEMBL | A0A2G2YJM0 | 0.0 | A0A2G2YJM0_CAPAN; homeobox-leucine zipper protein MERISTEM L1 | ||||
STRING | Solyc10g005330.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA932 | 24 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |