PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00580.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CO-like
Protein Properties Length: 741aa    MW: 82429.9 Da    PI: 6.0909
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00580.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.25.1e-061960439
                 zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                             r+C+ +++   + +C++++++lC  C   +H        H++
  Sme2.5_00580.1_g00007.1 19 RVCDSCHSVTCTVYCRTDSTYLCSGCDARIHAAslvashHKR 60
                             79******99*********************66788887765 PP
2zf-B_box24.36.3e-0860105241
                 zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                              + ++C+ +++ ++ + C+ +   lC++C   +H+       H +vp
  Sme2.5_00580.1_g00007.1  60 RVWICEACKRAPAAFLCKADVASLCASCNADIHSAnllahrHHRVP 105
                              5789****************************96688886665565 PP
3CCT23.42.1e-09366386121
                      CCT   1 ReaallRYkeKrktRkFeKki 21 
                              Rea++lRY+eK+k+RkFeK+i
  Sme2.5_00580.1_g00007.1 366 REARVLRYREKKKNRKFEKTI 386
                              9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.4141663IPR000315B-box-type zinc finger
SMARTSM003369.9E-51663IPR000315B-box-type zinc finger
CDDcd000213.98E-71963No hitNo description
PROSITE profilePS5011910.60859106IPR000315B-box-type zinc finger
PfamPF006434.7E-660106IPR000315B-box-type zinc finger
CDDcd000218.44E-762106No hitNo description
SMARTSM003361.4E-464106IPR000315B-box-type zinc finger
SMARTSM003360.14473520IPR000315B-box-type zinc finger
CDDcd000214.61E-4476508No hitNo description
PROSITE profilePS5011910.011520563IPR000315B-box-type zinc finger
CDDcd000214.63E-5520563No hitNo description
SMARTSM003367.2E-5521563IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MLKKENSRGF DGSSNNWARV CDSCHSVTCT VYCRTDSTYL CSGCDARIHA ASLVASHHKR  60
VWICEACKRA PAAFLCKADV ASLCASCNAD IHSANLLAHR HHRVPIIPIP GTLYDPPVVD  120
TVGGDSKIIG GPTGKGMEDD EFLRSRKDAN DVTIDEEDKN EAASRLLLNP PVKNDVNNNN  180
NQNNNYGMVF GGEVMVDYLD HAEYGGDNQF NDQYNVYQQQ QHYSVPQKSY AGDSVVPVQD  240
GRAKSLIFYH QQQQEQQSRH LNFQLGMEYD NSNTRLSYPA SMSHSTTDFN FYGQLTVVIF  300
EMIVNQSDAA FCFLYQVSVS SMDVSVVPES ALTETPNSHP RPPKGTIDLF SGPAIQIPPQ  360
LTPLAREARV LRYREKKKNR KFEKTISVNN TGCWTVDSRS CNRMVLSKAK GKKSTPGYDR  420
VLQQQQQQHT QEYLLKFSKS TIAIESKKRK KEAKISSMLK KENSWGFDGS NNNWGRVCDS  480
CHSTACTVYC QADSSYLCED YDIHIHAANM VASSHECICV CEACECAPAP FLCKADAASL  540
CASCDADIHS VNPLARRHHR IPVMPIPGSL YGPSAVDTIG GGTLMIGGPA GESTEDYEFL  600
SLTQDAFDMT IDEEDEDEAV SWLLLNPPVK NSKSNINNND NNQSNNYGML FGGELVDDFL  660
DLAEYGGDSQ FNDQYSVNQQ QQHFSVPQKS YGGDSVVPIQ DGQGKSLILY HQRQQQQSHH  720
LNFMLGMKYD NSNTRYGHLL L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446450KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4997550.0DQ499755.1 Solanum demissum CONSTANS mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338763.20.0PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
TrEMBLC0Z3T80.0C0Z3T8_SOLTU; CONSTANS protein
STRINGPGSC0003DMT4000260651e-180(Solanum tuberosum)
STRINGPGSC0003DMT4000260681e-180(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.12e-67CONSTANS-like 2