 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sme2.5_00538.1_g00012.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
GRAS |
| Protein Properties |
Length: 394aa MW: 43946.1 Da PI: 4.5607 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_00538.1_g00012.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 260.1 | 7.6e-80 | 112 | 377 | 1 | 274 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85
lv++L++cAea+++++l+ a+ l++ ++ l +s+ g +m+++ ayf+eA ++++r+ ++ + s s++ + ++ f+
Sme2.5_00538.1_g00012.1 112 LVNTLMACAEAIQENNLSFADVLISDIRRLtVSQIGGAMKKV-AYFAEAFYHKIHRTIPQ---NIVES-----FYSTNPFLHTSFY 188
6899**************************666667777776.6************3332...22111.....23344456678** PP
GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
+P+lk++++taNq Ilea++ ++rvH+iDf+ +qG+ WpaLlqaLa Rp+gpp +R+ g++ + ++ +++ l+e+g++La+fA
Sme2.5_00538.1_g00012.1 189 ASCPFLKIAYFTANQSILEAFADSKRVHVIDFSFNQGFRWPALLQALALRPGGPPAFRLSGISVQPKSddNSDPLQEVGWKLAQFA 274
**************************************************************9855556899************** PP
GRAS 170 eelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
+ +gv+fef+ +++++l+d+e ++L++ + Ea+aVn+v++lhrl+++++++e+ vL+l+ +++Pk+v+++e+ea++n++ F
Sme2.5_00538.1_g00012.1 275 DVTGVEFEFRGFMVHALTDVEASMLDIGHsdVEAVAVNSVFELHRLFSSPGAIEK----VLDLIGRIQPKIVTIAEREANLNGNAF 356
*************************9988889***************99999999....*************************** PP
GRAS 254 lerflealeyysalfdsleak 274
++r+ ea +yys++fd+le++
Sme2.5_00538.1_g00012.1 357 MDRIKEAWNYYSTMFDMLENS 377
******************877 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 394 aa
Download sequence Send
to blast |
MSSTEISMEN IIEDEDEDED SFVSNTNAII YAASDEHHHH HQQISTAAGG GDGDDDSMIV 60
SSSASSSWFM NNQQEIRIFN VDFRALCDNR LKSGPGSEFR GNTGKQETIV RLVNTLMACA 120
EAIQENNLSF ADVLISDIRR LTVSQIGGAM KKVAYFAEAF YHKIHRTIPQ NIVESFYSTN 180
PFLHTSFYAS CPFLKIAYFT ANQSILEAFA DSKRVHVIDF SFNQGFRWPA LLQALALRPG 240
GPPAFRLSGI SVQPKSDDNS DPLQEVGWKL AQFADVTGVE FEFRGFMVHA LTDVEASMLD 300
IGHSDVEAVA VNSVFELHRL FSSPGAIEKV LDLIGRIQPK IVTIAEREAN LNGNAFMDRI 360
KEAWNYYSTM FDMLENSEWT KRNTLDVEND GAVP
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}. |
