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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sme2.5_00401.1_g00018.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
E2F/DP |
| Protein Properties |
Length: 415aa MW: 47373.4 Da PI: 10.0285 |
| Description |
E2F/DP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_00401.1_g00018.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | E2F_TDP | 45.2 | 1.5e-14 | 42 | 84 | 37 | 71 |
E2F_TDP 37 e..........dvknkrRRiYDilNVLealnliekkekneirwkg 71
v +rRRiYDi+N+Le+++++++k+kn++rw+g
Sme2.5_00401.1_g00018.1 42 WkeagvhtkdrGV--ERRRIYDIVNILESIGVLSRKAKNQYRWNG 84
3445555553345..9***************************98 PP
|
| 2 | E2F_TDP | 70.8 | 1.6e-22 | 141 | 220 | 1 | 70 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70
rkeksL +l+q+f+kl+++s+ + ++l+++a++L+ + +k+k RR+YDi+NV+ ++nliek + k+ +rw+
Sme2.5_00401.1_g00018.1 141 RKEKSLMILAQNFVKLFHCSDVDLISLDKAASALLGDvhdlmAMKTKTRRLYDIANVFISMNLIEKirspdNGKPVFRWI 220
79****************************************************************99999999999997 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 415 aa
Download sequence Send
to blast |
MGFYNSFKLI KPYTHHLWRI FLSLKGISWI IPRKVAEALL CWKEAGVHTK DRGVERRRIY 60
DIVNILESIG VLSRKAKNQY RWNGYSAIPK AVDLLKKEGL KDLPSVSSTC HNVSNVIACN 120
HSDVEEKGEG KSSGSHKIDN RKEKSLMILA QNFVKLFHCS DVDLISLDKA ASALLGDVHD 180
LMAMKTKTRR LYDIANVFIS MNLIEKIRSP DNGKPVFRWI AWKENPRSGS PAAAKSDDST 240
RRTFGAEITN IIPKRCRDDS SSDLMSNGQV KRLRVTKDNE LKDKKPEMSA EQLNERGTKD 300
FVFGPFGPSS LPRSGVSGKE KLKQIQNWED LASKYHPRYQ NKAASELFAH YVEAWESWQF 360
PVLSDEFRAW VHRRQSISPT CLNLSYYKWQ MPAAIAMYQC FSSSLLFKPL EAIPN
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC215413 | 1e-171 | AC215413.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0189G15, complete sequence. |
| GenBank | HG975514 | 1e-171 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
