PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00276.1_g00023.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 616aa    MW: 69355.7 Da    PI: 9.7959
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00276.1_g00023.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.77.7e-104488250
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaar 50
                             +++GVr +k rg +vAe +dp        kr+ lg + taeeAa+a+ a +
  Sme2.5_00276.1_g00023.1 44 KFSGVRKRK-RGEYVAEKWDP-----ImkKRVCLGAYNTAEEAAEAYLAKK 88
                             799***999.8******8886.....336******************9876 PP
2AP237.27.1e-12183224247
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 
                              g  G+r  k +gr+ AeIrdp     + k+++lg+f+t eeA +a+ 
  Sme2.5_00276.1_g00023.1 183 GLLGIRKQK-NGRYSAEIRDPI----KhKQVWLGTFDTLEEASQAYL 224
                              566999888.8*********72....46*****************96 PP
3AP227.95.9e-09272320254
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                              ++ GVr +k +g++ +eI  p    ++ k+++lg+f + eeA +a+   +++++
  Sme2.5_00276.1_g00023.1 272 RIVGVRKNK-WGKYTSEIINP----ISkKKIWLGTFSSYEEACQAYKSKKLEFR 320
                              789***999.*******9996....246*****************998887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.7644102IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-104495IPR016177DNA-binding domain
PfamPF008475.4E-64489IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-124491IPR001471AP2/ERF domain
SMARTSM003801.2E-744105IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-11182227IPR016177DNA-binding domain
PROSITE profilePS5103213.683183242IPR001471AP2/ERF domain
SMARTSM003804.7E-7185252IPR001471AP2/ERF domain
PfamPF008472.2E-5186225IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-13186223IPR001471AP2/ERF domain
CDDcd000187.13E-14186223No hitNo description
PfamPF008472.3E-5271319IPR001471AP2/ERF domain
CDDcd000181.09E-11271320No hitNo description
SMARTSM003807.5E-6272326IPR001471AP2/ERF domain
PROSITE profilePS5103214.17272336IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-11273321IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.3E-13275320IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MESAVENKIP VSAHHMYGEM PSSNSTKKTA AAAERSDSLQ NAAKFSGVRK RKRGEYVAEK  60
WDPIMKKRVC LGAYNTAEEA AEAYLAKKCQ FASAHHLFDE MPSSNSAAVA VGKKPFIQEV  120
SFRDKSTLLA AEWHNMGKLR KRTFKKKQVF KSFKTNMHGK EPVESCKSDR CNAIKRNPKS  180
KSGLLGIRKQ KNGRYSAEIR DPIKHKQVWL GTFDTLEEAS QAYLSKKSEF AMLTQGNKEN  240
KQKNCDEPHP ESSFGASLSS LGGKMDSPKA TRIVGVRKNK WGKYTSEIIN PISKKKIWLG  300
TFSSYEEACQ AYKSKKLEFR EIVKAKKKCS KRINSNAREK QVGKEKLVVT SAGFQPKSAA  360
QDHANQNMKF DVQRSKEAEL KSNMPVGFST GEKQAEKEKL VVTSEGFQPE SAAEETFHAN  420
QYMTFHVQRS REAELISNMP FDFSTGEKQV GKEKIIVNCE GFQPESAAQE PFRANQYMKF  480
DVQRSKEAKL KRNMPLDFST GEKQAGKEKF LVNCEGFQPE SAAEETFHAE QCIKFDIWSS  540
KEAELQSKVL VDFSTGEKQG GRENADLSMG QWVQLPDGRE VKFSLELGLP IIDSYGSLLG  600
EFSGMDNLRI YDESIY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3297010.0CU329701.1 S.lycopersicum DNA sequence from clone LE_HBa-49A17 on chromosome 4, complete sequence.
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016572339.11e-89PREDICTED: uncharacterized protein LOC107870354
TrEMBLA0A3Q7FWN80.0A0A3Q7FWN8_SOLLC; Uncharacterized protein
STRINGSolyc04g009450.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1658755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.29e-17ERF family protein