PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00248.1_g00015.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 291aa    MW: 32863.1 Da    PI: 5.4544
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00248.1_g00015.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.93e-141966256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             +y+GVr +k++ r+ AeIr p      ++++lg+f+t+e Aa  ++ a++k++g+
  Sme2.5_00248.1_g00015.1 19 RYRGVR-KKSSSRYGAEIRNP------TYVWLGTFDTPELAASVYDMAARKYHGP 66
                             69***9.5669*********9......**************************95 PP
2AP221.75.1e-071882182652
                      AP2  26 g.kr.krf..slgkfgtaeeAakaaiaarkk 52 
                              g ++ +rf  +lg+f+taeeAa+a++ a+++
  Sme2.5_00248.1_g00015.1 188 GnRCeRRFvwRLGNFDTAEEAARAYDTAARR 218
                              45444443338*****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.50E-201975No hitNo description
Gene3DG3DSA:3.30.730.104.3E-191973IPR001471AP2/ERF domain
PfamPF008473.2E-61965IPR001471AP2/ERF domain
SMARTSM003802.3E-231979IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-151974IPR016177DNA-binding domain
PROSITE profilePS5103218.1491973IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-7196218IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MTKKKNGNVV AIAPPNEVRY RGVRKKSSSR YGAEIRNPTY VWLGTFDTPE LAASVYDMAA  60
RKYHGPITKT NFPPTNEDNL ENINPMDASD INNPNQSSDF GSFFESRDEL VIIQQNPFLN  120
HFSVFNSDDS APSQTTLEEY YSEILRRDGV ISCDPKPANY IQKEMTRDFI DGNDNRRGSS  180
NGSGSNNGNR CERRFVWRLG NFDTAEEAAR AYDTAARRNV ISINNNNDIG SFSRSGDGTV  240
RIPMPNENPD HEFFRLQQSP EKNCYFLTQR SFHNSSEPLN LELSLAPTGS M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1535068
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.17e-18ethylene responsive element binding factor 4