PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00238.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 796aa MW: 91161.2 Da PI: 6.6449 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.5 | 0.00027 | 136 | 192 | 4 | 32 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C............................. CS HLH 4 ahnerErrRRdriNsafeeLrellPk.as...........................k 32 + n+ E+r+R ++ + f r+ lP+ ++ k Sme2.5_00238.1_g00011.1 136 KTNILEQRYRINVGELFGHVRKKLPWaDPkvvkevvdlelykllgertaadnekpvK 192 45************************5556666666666666666666555554444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04558 | 3.4E-55 | 8 | 164 | IPR007639 | Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal |
Pfam | PF04557 | 7.0E-14 | 167 | 263 | IPR007638 | Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2 |
Gene3D | G3DSA:3.40.50.620 | 9.7E-39 | 270 | 339 | IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
SuperFamily | SSF52374 | 7.04E-84 | 270 | 578 | No hit | No description |
Pfam | PF00749 | 8.4E-115 | 270 | 569 | IPR020058 | Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain |
CDD | cd00807 | 7.87E-139 | 270 | 574 | No hit | No description |
TIGRFAMs | TIGR00440 | 1.3E-184 | 271 | 793 | IPR004514 | Glutamine-tRNA synthetase |
PRINTS | PR00987 | 4.7E-7 | 274 | 286 | IPR000924 | Glutamyl/glutaminyl-tRNA synthetase |
PROSITE pattern | PS00178 | 0 | 277 | 288 | IPR001412 | Aminoacyl-tRNA synthetase, class I, conserved site |
PRINTS | PR00987 | 4.7E-7 | 303 | 316 | IPR000924 | Glutamyl/glutaminyl-tRNA synthetase |
Gene3D | G3DSA:3.90.800.10 | 7.3E-36 | 343 | 441 | No hit | No description |
PRINTS | PR00987 | 4.7E-7 | 442 | 452 | IPR000924 | Glutamyl/glutaminyl-tRNA synthetase |
Gene3D | G3DSA:3.40.50.620 | 9.7E-39 | 444 | 493 | IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
Gene3D | G3DSA:1.10.1160.10 | 4.0E-31 | 494 | 571 | IPR020061 | Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain |
Pfam | PF03950 | 1.4E-40 | 572 | 771 | IPR020059 | Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain |
SuperFamily | SSF50715 | 1.36E-54 | 572 | 789 | IPR011035 | Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain |
Gene3D | G3DSA:2.40.240.10 | 8.0E-30 | 580 | 698 | IPR020056 | Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain |
Gene3D | G3DSA:2.40.240.10 | 1.4E-27 | 699 | 789 | IPR020056 | Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006425 | Biological Process | glutaminyl-tRNA aminoacylation | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004819 | Molecular Function | glutamine-tRNA ligase activity | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 796 aa Download sequence Send to blast |
MVKEDSNVLD LFLKIGLDER TAKNTLANNK VTTNLTAVIN EAAVTDGCDR AVGNLLYTVA 60 TKFPANALNH RPTLLQYIVS TKIKTPAQIE AAFAFLAATA SENLKVPDFE EACGVGVEVS 120 KDEIERAVSE VFEEKKTNIL EQRYRINVGE LFGHVRKKLP WADPKVVKEV VDLELYKLLG 180 ERTAADNEKP VKKKKEKPAK TEVVLHEKAK VEETSAPKQS EEELNPYLIF PAPEENYKVH 240 TEVYFSDRPV LRACNSKELL EKHLKVTGGK VRTRFPPEPN GFLHIGHAKA MFVDFGLAKE 300 RGGGCYLRFD DTNPEAEKKE YIDHIKEIVG WMGWEPFKIT YTSDYFQDLY ELAVELIRRG 360 HAYVDHQTAD EVKEYREKKM NSPWRDRPVE ESLRLFDEMK KGMIDEGKAT LRMKQDMQND 420 NFNMYDLIAY RIKARDKWCI YPSYDYAHCI VDSLENITHS LCTLEFETRR ASYYWLLDAL 480 SLYQPFVWEY SRLNVSNTVM SKRKLNRLVT ENWVDGWDDP RLMTLAGLRR RGVTSTAINA 540 FVRGIGITRS DSSMIQLSRL EYHIREELNK TAPRTMVVLN PLKVIITNLE AGLVMDLDAK 600 KWPEAPADDT SSFYKVPFSR VVYIERTDFR MKDSKDYYGL APGKSVLLRY AYPIKCTDVI 660 LADDKETVLE IRAEYDPSKT IKPKFPETVK LQGVLHWVAE PSPGVDPLKV EVRLFDRLFR 720 SENPVELDDW LGDLNSESKV VIQNAYAVPS VSKAALGDGF QFERLGYFAV DKDSTSEKLV 780 FNRTVTLRDT YAKGGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4r3z_C | 0.0 | 9 | 793 | 31 | 798 | Glutamine--tRNA ligase |
4ye6_A | 0.0 | 9 | 793 | 8 | 775 | Glutamine--tRNA ligase |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 6e-99 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 6e-99 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010320758.1 | 0.0 | glutamine--tRNA ligase isoform X1 | ||||
Swissprot | P52780 | 0.0 | SYQ_LUPLU; Glutamine--tRNA ligase | ||||
TrEMBL | A0A3Q7GEE9 | 0.0 | A0A3Q7GEE9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g009220.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6974 | 12 | 13 |