PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00236.1_g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GeBP | ||||||||
Protein Properties | Length: 592aa MW: 65477 Da PI: 5.7813 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 35 | 4e-11 | 250 | 278 | 2 | 30 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgksp 30 lfqrlwse+Dei++L+G+id+++k++++p Sme2.5_00236.1_g00020.1 250 LFQRLWSEDDEIAILKGMIDYRSKKKADP 278 79**********************99876 PP | |||||||
2 | HLH | 26.4 | 1.3e-08 | 463 | 507 | 4 | 51 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 ++ rE+ RR+r+N++f eL ll + + +K +K+++L Av+ + Sme2.5_00236.1_g00020.1 463 SKACREKLRRERLNDKFMELGALLEPG---RPPKTDKSTVLVDAVRMV 507 5678**********************8...89************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.5E-7 | 251 | 278 | IPR007592 | Protein of unknown function DUF573 |
Pfam | PF04504 | 6.1E-7 | 279 | 313 | IPR007592 | Protein of unknown function DUF573 |
PROSITE profile | PS50888 | 11.884 | 459 | 510 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.99E-5 | 462 | 505 | No hit | No description |
Pfam | PF00010 | 2.8E-6 | 463 | 507 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.1E-9 | 463 | 532 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-9 | 464 | 539 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-5 | 465 | 518 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 592 aa Download sequence Send to blast |
MVSPENTNWL YDYGFEDSSI PDSNFSASAS GFSWPVQNLN GSRNVQSPAE TKTLGDFFSS 60 VLVWWTELPG IYCCDKHPVE LVEMAKNHPE EEEGESGEEM EVSSPEKADT ESDSELELKS 120 EPEQEQPPKK PPVAALKKPL PQDSSSSTEE ESDSESEPET QKPNPVVKPI ASKPMDEPKK 180 VAPTAEKKPR SKADATAKFI SPKKSAPVVG AKRPVDDGEA KESKRSKKKP EKEIETPVKK 240 TPTDDVKRQL FQRLWSEDDE IAILKGMIDY RSKKKADPEK YENNAGKEKK GKERTFSKPH 300 EQKGYELSQK IWGKEKSDKV QDAVVKMKNV TSSKGQSNSG SKDIGVLIVA KEGKLSTEVE 360 KTMEVTPNLS LISCGGSVAA LEKWLDEYSG LLSAEKRNEI KEKSTSLKVT EAGLCLRRVN 420 LIAEQGELMP NSEIDGSIGE SDYPKESGSK KRARVESCAP SSSKACREKL RRERLNDKFM 480 ELGALLEPGR PPKTDKSTVL VDAVRMVEKT ELRDEKHRLK AEKEKLEQQL KTTSAPPSFL 540 PPPIPAPFAA PGQFPGSKLV PIMSYPGVAM WQFMPPAAVD TSQDHVLRPP VA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 1e-167 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006363288.1 | 1e-145 | PREDICTED: mediator-associated protein 1-like | ||||
TrEMBL | M1D1F7 | 1e-144 | M1D1F7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400079215 | 1e-145 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3042 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 8e-52 | bHLH family protein |