PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_00228.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 504aa MW: 57369.6 Da PI: 4.5994 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 148.7 | 2.9e-46 | 42 | 167 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 p G+rF P+d+el+v+yLkkk+ ++ l+ + ikev++y+++P++L + + +++ewyfF++rd+ky++g+r+nra+ +gyWkat Sme2.5_00228.1_g00012.1 42 PSGYRFCPHDQELIVYYLKKKIMNEVLPH-NKIKEVNLYRHNPEELSeNYAVLGDNEWYFFTPRDRKYPNGDRPNRAAGTGYWKAT 126 89************************999.77**************8445556999****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g dk++++ ++ +vg +k Lvf++g+ p+g+kt+W+mhe+r+ Sme2.5_00228.1_g00012.1 127 GADKPIMH-NNITVGFRKALVFHQGKPPNGNKTNWIMHEFRV 167 ********.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-54 | 38 | 192 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.535 | 41 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-24 | 42 | 167 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 504 aa Download sequence Send to blast |
MESYEENKAL MKANCWNTSV NPKMHKQKKR KLQIHDDNFV FPSGYRFCPH DQELIVYYLK 60 KKIMNEVLPH NKIKEVNLYR HNPEELSENY AVLGDNEWYF FTPRDRKYPN GDRPNRAAGT 120 GYWKATGADK PIMHNNITVG FRKALVFHQG KPPNGNKTNW IMHEFRVNES PRPKADASDM 180 KLDDWVLCRI YKRYSKSKDK EEHKQKNANK NNSPLPTMVD KSEKEVFMDN SCVEFAKQQF 240 GADDLNFVFD FSKYNPDYFP YYGAEINIQS SFPPPATLLS DPRGLYEESN IQSSFSPPAT 300 SLSDPRGLYE ENNIQSSFSP PATSLSDPRG LYEESTIQSS FSPLAISLFP PYEENNVQSS 360 YSPPATLLSD PRGLYEESNI QSSFSPLATL LLDPRGLYEE SNIQSSFSPP AISLFPPYEE 420 NNVQSSFSSP ATLLFSPPAT LLSVPSELDE ESNIQLSVSP PSTDPDEFPD DSPPATDPGE 480 FPDELDEENN IFPINFYYSP ENSS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-52 | 41 | 198 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 4e-52 | 41 | 198 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 4e-52 | 41 | 198 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 4e-52 | 41 | 198 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 4e-52 | 41 | 198 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 4e-52 | 41 | 198 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 4e-52 | 41 | 198 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 4e-52 | 41 | 198 | 20 | 173 | NAC domain-containing protein 19 |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 21 | 30 | PKMHKQKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016546854.1 | 1e-111 | PREDICTED: NAC domain-containing protein 72-like | ||||
TrEMBL | A0A2G2VNX3 | 1e-111 | A0A2G2VNX3_CAPBA; NAC transcription factor | ||||
STRING | XP_009759087.1 | 1e-100 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA746 | 24 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G77450.1 | 5e-59 | NAC domain containing protein 32 |