PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00225.1_g00014.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CAMTA
Protein Properties Length: 1186aa    MW: 135100 Da    PI: 7.0874
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00225.1_g00014.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1178.11.1e-551582743118
                     CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYah 87 
                              +e ++rwl++ ei++iL n++k++lt e++ rp sgs++L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah
  Sme2.5_00225.1_g00014.1 158 SEvQHRWLRPAEICEILRNHRKFHLTPEAPYRPVSGSVFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAH 243
                              5559********************************************************************************** PP

                     CG-1  88 seenptfqrrcywlLeeelekivlvhylevk 118
                              +ee+ +fqrr+yw+Le++l +iv+vhylevk
  Sme2.5_00225.1_g00014.1 244 GEEDDNFQRRSYWMLEQDLMHIVFVHYLEVK 274
                              ****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.591153279IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-79156274IPR005559CG-1 DNA-binding domain
PfamPF038597.3E-49160273IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.107.9E-6600686IPR013783Immunoglobulin-like fold
PfamPF018334.9E-6601686IPR002909IPT domain
SuperFamilySSF812969.8E-17601687IPR014756Immunoglobulin E-set
SuperFamilySSF484034.2E-15790895IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.3E-15797911IPR020683Ankyrin repeat-containing domain
CDDcd002043.58E-12799893No hitNo description
PROSITE profilePS5029716.494801905IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.484834866IPR002110Ankyrin repeat
SMARTSM002480.0036834863IPR002110Ankyrin repeat
SuperFamilySSF525402.63E-710071059IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000151.310081030IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.40710091038IPR000048IQ motif, EF-hand binding site
PfamPF006123.8E-410101029IPR000048IQ motif, EF-hand binding site
SMARTSM000150.001210311053IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.54210321056IPR000048IQ motif, EF-hand binding site
PfamPF006128.3E-510341053IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1186 aa     Download sequence    Send to blast
MVNSIKFILH DVLKDLLLVV INVLEVRVQG KAFYLIGETL RRWVLCDKKV QLYKVVVRST  60
MLYGVKCWSV KNSHIRKIKV AEMRMLRWMH GHIKKDKIRN EVIRHKVGVS LMKDKIWEVR  120
LRCFGHIKRR CTDASVRRCE RLTMDDFKRG RDITQILSEV QHRWLRPAEI CEILRNHRKF  180
HLTPEAPYRP VSGSVFLFDR KVLRYFRKDG HNWRKKKDGK TVKEAHEKLK VGSIDVLHCY  240
YAHGEEDDNF QRRSYWMLEQ DLMHIVFVHY LEVKGNKVNV SCIRSTKPAH QNYLNDCSLS  300
DSFPTRHKNL ASANTDSASL ASTLTEAHEE AESEDSHQAC SRFHSYPDRA SGMDSHVVEN  360
RDTICSSYGS PPSSVEYTPL PSIDGASKCD LGNFASAPQR TIDLGSQEPV SQHYSNGEMV  420
CQDDFKNNLS VHGNWQYSFG HSPLQFHGQN VNQDMIADSS YDLGLPSDLL TVRRQSYLYP  480
DDQEEKLTQL NLQYLNSLVE VQGDINQENS MDMLGLGDYS MSKQPHLSSF KLEEGLKKVD  540
SFSRWVAKEL EDVEELHMHP SNRLSWNVID TEDDGSCLPS QLHVDSDSLD PSLSQEQVFS  600
IIDFSPNWAY SNLETKVLIT GRFLKSESEL LKYKWSCMFG EVEVPAEVLA DGVLRCHAPP  660
HKPGVLPFYM TCSNRLACSE VREFEYRFGP YQEFGAADVS KTEMHLLERI ENLLSLGPVS  720
SCRNSDSLEA SKERQSTVNK IICMMEEENQ QMIQSSSYYD TSQCRVEEDL FSERKLKQNF  780
YAWLIHQVTD DGKGRTHLDD EGQGILHLVA ALGYDWALKP ILASGVSVDF RDMNGWTALH  840
WAAFYGREKT VVGLVSLGAS PGALTDPSSE FPLARTPADL ASANGHKGIS GFLAESSLTT  900
HLSKLTVTDA KEELALEVCG AKVGERVAEC VAVATTGNDV PDVLSLKDSL AAIRNATQAA  960
ARIHQIFRVQ SFQRKQIIEH CDNELSSDEN ALSIVASRAS KLGQNNVIAH AAAIKIQKKF  1020
RGWNKRKEFL LIRQKIVKIQ AHIRGHQVRK KYKPIIWSVG ILEKVILRWR RKRSGLRGFR  1080
SEAVMNKSST IDDSLPEDDY DFLKEGRKQT EVRMQKALSR VKSMTQYPEG RAQYRRLLTA  1140
AEGLREVKDG PTQIPEIPED AIYPEEDLFD VESLLDDDTF MSIAFE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5588100.0JN558810.1 Solanum lycopersicum calmodulin-binding transcription factor SR1L mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351777.10.0PREDICTED: calmodulin-binding transcription activator 2 isoform X2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A0V0IYH00.0A0A0V0IYH0_SOLCH; Putative calmodulin-binding transcription activator 2-like
STRINGSolyc01g105230.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22302146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]