PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sme2.5_00187.1_g00005.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

MYB_related

Protein Properties

Length: 184aa MW: 21594.8 Da PI: 4.5072

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00187.1_g00005.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.6	2.9e-18	5	52	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd +l++++ ++G g+W++ ar+ g++Rt+k+c++rw++yl Sme2.5_00187.1_g00005.1 5 RGPWSVEEDYILINYISRYGEGRWNSLARCAGLKRTGKSCRLRWLNYL 52 89********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.479	1	56	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-21	2	55	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-15	4	54	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-16	5	52	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.9E-22	6	79	IPR009057	Homeodomain-like
CDD	cd00167	1.20E-11	7	52	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-5	56	79	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MELRRGPWSV EEDYILINYI SRYGEGRWNS LARCAGLKRT GKSCRLRWLN YLRPNVRHGN 60 ITLEEQLLIL QLHSRWGNSS ATRSENMRTD ITEFVPIQLA NSNNNNSTLS TSVTTENTSM 120 TTLSENSIEA QVSPDQDYYQ VNQSDHQLWF EDYYQGMDQQ NNIQLWMDNE DIFNNLCNIE 180 DIWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-16	2	113	24	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU934734	2e-83	EU934734.1 Solanum lycopersicum ABA-induced MYB transcription factor (AIM1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006349850.1	1e-68	PREDICTED: transcription factor MYB108-like
TrEMBL	M1A033	2e-67	M1A033_SOLTU; Uncharacterized protein
STRING	Solyc12g099130.1.1	1e-68	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.2	5e-35	myb domain protein 78