PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00186.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 138aa MW: 15696.3 Da PI: 5.2193 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.1 | 2.1e-10 | 40 | 72 | 1 | 36 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapsk 36 ++ +hn+ Er RR++iN ++ Lr+llP + +++ Sme2.5_00186.1_g00003.1 40 KKLNHNASERDRRKKINGLYSSLRSLLPAS---DHT 72 6789************************97...555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.45E-8 | 32 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.633 | 39 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.5E-8 | 40 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.40E-7 | 40 | 67 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-8 | 40 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MESLHSSSSS QKSLQHSDSN KFDQININGG DHHQPDQTIK KLNHNASERD RRKKINGLYS 60 SLRSLLPASD HTINNGSIDE AISQLEDEGL VLLNASSFET FEDRLFYTLH FQVEGAMVVE 120 VDMLRDKLSS YFEKEDKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975522 | 2e-67 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006351394.1 | 1e-38 | PREDICTED: transcription factor ORG2-like | ||||
TrEMBL | M1CXD3 | 1e-38 | M1CXD3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400076775 | 2e-39 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2226 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 3e-14 | bHLH family protein |