PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00179.1_g00023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 585aa MW: 63762.3 Da PI: 6.2368 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.5 | 1.5e-10 | 295 | 340 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++I+ Lq Sme2.5_00179.1_g00023.1 295 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIRTLQ 340 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.954 | 289 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-13 | 292 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.24E-11 | 293 | 344 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-11 | 294 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.4E-8 | 295 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-12 | 295 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF52540 | 1.61E-11 | 456 | 560 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00931 | 8.9E-19 | 456 | 559 | IPR002182 | NB-ARC |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 585 aa Download sequence Send to blast |
MYPSSTSSSS QTSMSHSSNT AGGGGSLTRY GSAPGSFLTT AVESVVNGNH EFASHGSHHS 60 HLGPSRYFPS NLASTSLNSE STSKPKEQSN LQRSIGFNDL TIGGGAVSGG GDGGALPATS 120 TTPLVRHSSS PARFLNQLAT AAGDTGFSVS MGRGSYNSKG GGDSGRGITR LNSQLSFTRQ 180 EALSQIAEEN EDIEGASIDN GHRKSTHSYA SASSFAMGSW EDNNSIMFSV TPSKRAKHIS 240 NDIVNGLDDG ETQFQFGLSQ TALEMASMDR LLHIPEDSVP CKIRAKRGCA THPRSIAERE 300 RRTRISGKLK KLQDLVPNMD KQTSYADMLD LAVQHIRTLQ DQVQGRTINL AYEAEVSTDS 360 ILAQYNVFWH IFCSLPINIK EIKQINAEVT EMCEVALMPC YELSPCKHLT TRHSNSLSDE 420 EIVGFEIATE KLVQYLTRGT SELDVIPIGM GGQGMAWDDL RLSFPDVGNR SRIVVTTRLE 480 KVGEQVKYHT DPHSLPFLTT DESCQLLQKK VFQKEDCPRE LRDVSQAVAG LPLVVVLVAG 540 TIKKWKTEES WWNEVKDALF DCLDPESEEY CRANIVLIVS QKNAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6s2p_N | 3e-11 | 456 | 546 | 127 | 226 | NRC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU530153 | 1e-148 | KU530153.1 Solanum demissum R8 gene cluster, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015087286.1 | 0.0 | transcription factor bHLH128-like isoform X1 | ||||
TrEMBL | M1A858 | 0.0 | M1A858_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400016793 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6455 | 23 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 2e-70 | bHLH family protein |