PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_00166.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 216aa MW: 25154.5 Da PI: 7.79 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 54.6 | 3.8e-17 | 15 | 143 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWka 85 G++FhPt e++ +yL +++++l+ ++ ++ vd+y +Pw++ e + yf ++ +kk+ + r +r + ++g+Wk+ Sme2.5_00166.1_g00005.1 15 LGCHFHPTHREVI-KYLVGFATDEPLPGQDEvMQLVDVYAEkDPWQIV-----EGSTGYFITPLKKKKDHHIRWKRgVGDNGTWKS 94 69***********.9**********88766549999*996549****6.....55778******************8889****** PP NAM 86 tgkdkevlskkgelvglkktLvfy.kgrapkge.....ktdWvmheyrl 128 + ++k+v+++kg+l+g + L + ++p ++ +W+m ey+l Sme2.5_00166.1_g00005.1 95 QDSQKQVFDHKGRLIGYVHHLKYTpASSKPCSSiikelFGEWLMTEYSL 143 ************************52244433334333679******87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.479 | 13 | 165 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.71E-19 | 13 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-10 | 16 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
MADHLHHHQA KRRSLGCHFH PTHREVIKYL VGFATDEPLP GQDEVMQLVD VYAEKDPWQI 60 VEGSTGYFIT PLKKKKDHHI RWKRGVGDNG TWKSQDSQKQ VFDHKGRLIG YVHHLKYTPA 120 SSKPCSSIIK ELFGEWLMTE YSLYTGDINK KIINTDFAIC KIKKKKQKKS KNQDKDMTMS 180 ETEVTKFINS VLHEEDTDHD QLDATNNINL EDYEFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015062529.1 | 5e-74 | uncharacterized protein LOC107008123 isoform X1 | ||||
TrEMBL | M0ZGR1 | 6e-70 | M0ZGR1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400000450 | 1e-70 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1024 | 13 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15510.1 | 3e-08 | NAC domain containing protein 2 |