PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00123.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YB
Protein Properties Length: 127aa    MW: 14310.1 Da    PI: 5.7056
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00123.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB176.23.2e-5519115197
                    NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                              ++eqdr+lPianv+rimk++lP+nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal++lGf+dyv plk y
  Sme2.5_00123.1_g00003.1  19 MKEQDRLLPIANVGRIMKHILPQNAKISKEAKETMQECVSEFISFVTGEASDKCHNEKRKTVNGDDICWALGNLGFDDYVVPLKRY 104
                              589*********************************************************************************** PP

                    NF-YB  87 lkkyrelegek 97 
                              l++yrelegek
  Sme2.5_00123.1_g00003.1 105 LHRYRELEGEK 115
                              *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.9E-5215122IPR009072Histone-fold
SuperFamilySSF471131.16E-3922123IPR009072Histone-fold
PfamPF008082.0E-272589IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.6E-175371No hitNo description
PROSITE patternPS0068505672IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.6E-177290No hitNo description
PRINTSPR006154.6E-1791109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MVDSNNILGS FDSSEEGGMK EQDRLLPIAN VGRIMKHILP QNAKISKEAK ETMQECVSEF  60
ISFVTGEASD KCHNEKRKTV NGDDICWALG NLGFDDYVVP LKRYLHRYRE LEGEKSNQNY  120
KAPGGNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4419110192Transcription factor HapC (Eurofung)
4g92_B1e-4419110192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-125HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567970.15e-79PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822487e-61NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2G2ZW853e-78A0A2G2ZW85_CAPAN; Nuclear transcription factor Y subunit B-3
TrEMBLA0A2G3CTQ33e-78A0A2G3CTQ3_CAPCH; Nuclear transcription factor Y subunit B-3
STRINGPGSC0003DMT4000296081e-76(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.13e-63nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]