PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00123.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 539aa MW: 59543.4 Da PI: 8.8206

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00123.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Sme2.5_00123.1_g00002.1 80 FVCEICNKGFQRDQNLQLHRRGH 102 89*******************88 PP
2	zf-C2H2	15.5	4.9e-05	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Sme2.5_00123.1_g00002.1 156 WKCDKCSKKYAVQSDWKAHQKTC 178 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	79	102	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.62E-8	79	102	No hit	No description
PROSITE profile	PS50157	10.949	80	102	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	80	102	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	82	102	IPR007087	Zinc finger, C2H2
SMART	SM00355	77	121	151	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.9E-5	144	177	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.62E-8	151	177	No hit	No description
SMART	SM00355	94	156	176	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MSNISGEEGS FSSGEEANLH TSNNNISSVT TSNGSSSQSQ QQQNKQQPLA KKKRNLPGNP 60 DPKAEVVALS PTTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTTTEVRKRV 120 YICPEPTCVH HNPARALGDL TGIKKHYSRK HGEKKWKCDK CSKKYAVQSD WKAHQKTCGT 180 REYKCDCGTI FSRRDSFITH RAFCDALAEE NNKVNQGQMN NNMEHNMHSG QMHELMTSNA 240 SLGLSEFSNF DPKINPLKSL PQELLPIPFK SMNNNMPPGG MFSTTSGNLF GSSPRSVASS 300 SSGLQLSSNI PSNFNYLQDN GKNGMAQGQG QLPAPMSATA LLQKAAQMGA TASSSINSPM 360 MQKSFVTSAM AGPDIAITRP LPTYENFQMQ QDLQNQNQNH QSNLAAVMND MGIYSGILMS 420 NDQNNDGGYI KNVTEVLDRE NHNNSTNDTS SHHHVMGIRN QTHVLGQNGS NDDMLTVDFL 480 GVGGTTSRAP ISNLQEQRRL EEAINQQRMQ AAVAVNPFHH QQNINSQGNS GLEKPIWDV

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MSNISGEEGS FSSGEEANLH TSNNNISSVT TSNGSSSQSQ QQQNKQQPLA KKKRNLPGNP  60
DPKAEVVALS PTTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTTTEVRKRV  120
YICPEPTCVH HNPARALGDL TGIKKHYSRK HGEKKWKCDK CSKKYAVQSD WKAHQKTCGT  180
REYKCDCGTI FSRRDSFITH RAFCDALAEE NNKVNQGQMN NNMEHNMHSG QMHELMTSNA  240
SLGLSEFSNF DPKINPLKSL PQELLPIPFK SMNNNMPPGG MFSTTSGNLF GSSPRSVASS  300
SSGLQLSSNI PSNFNYLQDN GKNGMAQGQG QLPAPMSATA LLQKAAQMGA TASSSINSPM  360
MQKSFVTSAM AGPDIAITRP LPTYENFQMQ QDLQNQNQNH QSNLAAVMND MGIYSGILMS  420
NDQNNDGGYI KNVTEVLDRE NHNNSTNDTS SHHHVMGIRN QTHVLGQNGS NDDMLTVDFL  480
GVGGTTSRAP ISNLQEQRRL EEAINQQRMQ AAVAVNPFHH QQNINSQGNS GLEKPIWDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-35	152	221	3	72	Zinc finger protein JACKDAW
5b3h_F	6e-35	152	221	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	1e-166	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004247541.1	0.0	protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	1e-113	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A3Q7I6R1	0.0	A0A3Q7I6R1_SOLLC; Uncharacterized protein
STRING	Solyc09g074780.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-100	C2H2 family protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]