PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00110.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 298aa    MW: 32299 Da    PI: 9.935
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00110.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.7e-14108152347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
  Sme2.5_00110.1_g00005.1 108 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 152
                              8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.67101157IPR017930Myb domain
SuperFamilySSF466895.53E-17103157IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-17104155IPR006447Myb domain, plants
SMARTSM007171.8E-10105155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-11107152IPR009057Homeodomain-like
PfamPF002491.7E-11108152IPR001005SANT/Myb domain
CDDcd001671.65E-9108153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MLSFGSHSGN NVQNSVTCTG ESSPAAMSAG GGEIMLFGVR VKVDPMRKSV SLNNLSQYEQ  60
PNSNDNNNSN GGNNNDSSKV AADEGYASAD DAVPHHSGCV RERKRGVPWT EEEHKLFLLG  120
LQKVGKGDWR GISRNFVKTR TPTQVASHAQ KYFLRRTNLN RRRRRSSLFD ITTDSVSVLP  180
TEETKNLQEH SIPSLPPVET SKINAFQVTS LPVNLGTLIL PAQIEKPIES PVLSRGNQSY  240
NGSSVFLRPV PVVVPMSNSS RIADLNLNQS SAMETSSLSL TLSLSSPSSS SSTRHSGF
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00236DAPTransfer from AT1G74840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5608991e-162EU560899.1 Capsicum annuum clone DEG202 MYB transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069995.11e-131transcription factor MYB1R1-like
SwissprotQ2V9B07e-91MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A3Q7FSP51e-129A0A3Q7FSP5_SOLLC; Uncharacterized protein
STRINGSolyc03g113620.2.11e-130(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25742351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.25e-56MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]