PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00085.1_g00043.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 293aa MW: 32239 Da PI: 7.0071 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.8 | 1.6e-30 | 89 | 142 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Sme2.5_00085.1_g00043.1 89 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 142 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.69E-20 | 86 | 146 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.059 | 86 | 145 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-30 | 88 | 147 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-24 | 90 | 142 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-7 | 92 | 141 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MREEDSNWFA KWEEELPKPE DLMPLSQSLI TPDLAIAFDI PNPTSPNPQS KQQQTPHVQS 60 SQPNSSAEFE SAELNGAGGG DEPARTLKRP RLVWTPQLHK RFVDAVAHLG IKNAVPKTIM 120 QLMSVDGLTR ENVASHLQKY RLYLKRMQGH SNSGSGAQSL SGAGVDPAMD NLFASSPVPA 180 HFLHPGRGNS DHFMPFVPVT PMQHHHHMGV VVGHHPQVQQ QYRQFGSPAN GHFEHPFLSR 240 QSQQQVQRIG TSVHNGSAVV SSYVEDVDSA TAVNGRRVLT LFPTGEDGYQ GNC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 6e-32 | 89 | 145 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004249126.1 | 0.0 | transcription factor MYBC1 | ||||
Refseq | XP_006364782.1 | 0.0 | PREDICTED: transcription factor PCL1-like | ||||
Refseq | XP_015056300.1 | 0.0 | transcription factor MYBC1-like | ||||
Swissprot | O22210 | 1e-61 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A2G2VAZ0 | 0.0 | A0A2G2VAZ0_CAPBA; Two-component response regulator ARR1 | ||||
STRING | Solyc10g078310.1.1 | 0.0 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400018485 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2432 | 23 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 1e-92 | G2-like family protein |
Publications ? help Back to Top | |||
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