PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00083.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HB-other | ||||||||
Protein Properties | Length: 378aa MW: 41671.8 Da PI: 5.0545 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 16.5 | 1.4e-05 | 149 | 209 | 1 | 54 |
TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt +++eq+ e++ +++ + ++++ e A kl ++t++q k+W Nr+a+ Sme2.5_00083.1_g00011.1 149 KRKRTIMNDEQISLVEKALMEEPDMqrNKASLESWAVKLsahgsEVTKSQLKNWLNNRKAR 209 79******************977771155678999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-6 | 135 | 212 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.16E-5 | 138 | 212 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.965 | 146 | 213 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.1E-4 | 148 | 217 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.02E-4 | 149 | 212 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0060195 | Biological Process | negative regulation of antisense RNA transcription | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MGVGVELVSD LAYRFQEVQN LGGYLPPQLR EVPLDLNNIS SNSREDILDN SSLQRLNQLN 60 SRINDEGQSG EAGKKGEMTE HERFKAISIE VKGIETQNVE TSGSDSSSTR SRHPTDQVGK 120 VEQMNCNGPG EVREDEMVEA QHEEKQQRKR KRTIMNDEQI SLVEKALMEE PDMQRNKASL 180 ESWAVKLSAH GSEVTKSQLK NWLNNRKARL ARAAKDGRML SEGDTLDKQG GLLTLPPCDS 240 PGSPVEDVGI LSAARENAQR VTGLAPSSTC LTENTTAVPA ASSESAKCVA GDYVVLINEK 300 AEEIGRGKVC QVSGKWYQRD LEELGTCVVD VIDLKVERTA KLPYPSELTG ASFDQAERKF 360 GFMRVLWQSS KLVVLPAR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214463 | 0.0 | AC214463.1 Solanum lycopersicum chromosome 9 clone C09HBa0080D01, complete sequence. | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015088553.1 | 0.0 | nodulin homeobox isoform X1 | ||||
Refseq | XP_015088556.1 | 0.0 | nodulin homeobox isoform X3 | ||||
TrEMBL | A0A3Q7I700 | 0.0 | A0A3Q7I700_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g074330.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7844 | 5 | 7 |