PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

WOX

Protein Properties

Length: 277aa MW: 30967.7 Da PI: 6.0448

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00033.1_g00028.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.9	6.1e-22	97	157	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ Fe+ n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Sme2.5_00033.1_g00028.1 97 RQRWTPTPMQLQILERIFEQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 157 89***************99************************************97 PP
2	Wus_type_Homeobox	101.7	5.1e-33	97	159	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Sme2.5_00033.1_g00028.1 97 RQRWTPTPMQLQILERIFEQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 159 89***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.337	93	158	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-18	93	163	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.11E-19	95	163	IPR009057	Homeodomain-like
SMART	SM00389	2.1E-15	95	162	IPR001356	Homeobox domain
Pfam	PF00046	9.9E-20	97	157	IPR001356	Homeobox domain
CDD	cd00086	1.91E-16	97	159	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MEWEKQQQQQ QPPVSAAQTA EEMNGAVSGG GGMFVKVMTD EQMEVLRKQI AVYATICEQL 60 VDLHKSMASQ HDLAGARLGN LYCDPLVTSA GHKITGRQRW TPTPMQLQIL ERIFEQGNGT 120 PSKQKIKEIT SELSQHGQIS ETNVYNWFQN RRARSKRKQQ VAATSHTELE VETEVESPNE 180 KKTKPEDLQS SHLPTSMAED LGYEKPDVSS GMHSLDPRTS KPEPMFPSDG SSKPAASYGQ 240 MSFYGMSNPR MDQLMGKMEV PGSYHPYLHA DDYNMTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	158	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215450	0.0	AC215450.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0026H18, complete sequence.
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006340846.1	0.0	PREDICTED: WUSCHEL-related homeobox 8
Swissprot	O81788	2e-85	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	M0ZMN1	0.0	M0ZMN1_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400003980	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-86	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]