PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00009.1_g00017.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 340aa    MW: 38900 Da    PI: 4.9516
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00009.1_g00017.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.6e-30116176259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++dp ++eitY+g+H+++
  Sme2.5_00009.1_g00017.1 116 DDGYSWRKYGQKDILGAKYPRSYYRCTYRlmqNCWATKQVQRSDDDPALFEITYKGTHTCN 176
                              8***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-29107177IPR003657WRKY domain
PROSITE profilePS5081121.494110178IPR003657WRKY domain
SuperFamilySSF1182902.75E-26114177IPR003657WRKY domain
SMARTSM007748.9E-41115177IPR003657WRKY domain
PfamPF031062.7E-27116175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDCGFNCDYN SLINELTQGL EYVKQLRASN NIQELDFHMQ MILFSFEKSL SILNWNGSVT  60
QTPLLIAPPE SSISVEENPR SDDQDFRYVS KKRKQMPTWS EQVRVSAENG YEGPTDDGYS  120
WRKYGQKDIL GAKYPRSYYR CTYRLMQNCW ATKQVQRSDD DPALFEITYK GTHTCNQTFN  180
CAATQPKSPE KHRFKKQANN PITPPSNQML ANLQANLRVN TNDLHQKEAT CSFPFSPTFS  240
GFVDENLHFQ ISQVDDNLVG GYSPSFVSPT TPESSYFSLP SYQMNDSQRI HNAHHSESDQ  300
PDLFSANTSS TSSPIIGLEF PLEQVELDPN FPFDNSEFFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-19116175968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092950.0AP009295.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08SLe0011M12, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343875.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLM1AW240.0M1AW24_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000316950.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.16e-59WRKY family protein