PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_00008.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 226aa MW: 26430.7 Da PI: 5.4323 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.3 | 3.8e-33 | 11 | 142 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratk..sgy 82 ppGfrF Ptd+e++++yL + ++g+ ++ +i+ +d+y+ +P ++p + +++ee+ +yfF++r++k ++g+r+ r+t+ +gy Sme2.5_00008.1_g00002.1 11 PPGFRFCPTDQEILQDYLLRYLTGQFIPP-GIIRPFDVYERNPYHIPvTtaGIETEEQFTYFFTERARKWEKGSRTDRVTRdrKGY 95 9*************************999.89***************4333444455566******************998779** PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyr 127 Wk++ k ++v++++g+ g k tLv+y + +++ kt+W+mhe+ Sme2.5_00008.1_g00002.1 96 WKSSSKITSVCAENGSYLGKKSTLVYYvkNSGNKEDIKTNWIMHEFL 142 ***************************7533455558********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-36 | 9 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 38.375 | 10 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-20 | 11 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MSGEEWKKQI PPGFRFCPTD QEILQDYLLR YLTGQFIPPG IIRPFDVYER NPYHIPVTTA 60 GIETEEQFTY FFTERARKWE KGSRTDRVTR DRKGYWKSSS KITSVCAENG SYLGKKSTLV 120 YYVKNSGNKE DIKTNWIMHE FLIAKYLVSA SSSSAQPEDE HYEDLVVCRI YENERYKNQG 180 RTGERMHLIN YLIGPKPEED ILDLWDILSV PPPNDSFEDY LQSPGI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-24 | 9 | 174 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016576349.1 | 6e-62 | PREDICTED: NAC domain-containing protein 83-like | ||||
TrEMBL | A0A2G2WLI7 | 4e-62 | A0A2G2WLI7_CAPBA; Uncharacterized protein | ||||
STRING | Solyc06g068580.1.1 | 2e-52 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16162 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04070.2 | 8e-23 | NAC domain containing protein 47 |