PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00003.1_g00061.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRF
Protein Properties Length: 414aa    MW: 45641.9 Da    PI: 8.9876
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00003.1_g00061.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC67.71.5e-21115158145
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                              d+epgrCrRtDGKkWRC+++v++g+k+C  H+hrg  rsrk++e+
  Sme2.5_00003.1_g00061.1 115 DPEPGRCRRTDGKKWRCKKDVIPGQKYCGPHMHRG-RRSRKPVEP 158
                              79*********************************.689998886 PP
2WRC59.84.3e-19305343240
                      WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 
                              +ep rCrR+DGKkWRCs++v++ +k+CE H+hrg +r++
  Sme2.5_00003.1_g00061.1 305 TEPQRCRRSDGKKWRCSKKVVPCQKYCETHMHRGANRKK 343
                              79**********************************987 PP
3QLQ43.78.5e-165186136
                      QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                             s FTaaQ+q+L  Q+ ++Ky+ +++PvP +L ++i+
  Sme2.5_00003.1_g00061.1 51 SLFTAAQFQELQLQAVIFKYIFSGLPVPFHLFFIIW 86
                             68********************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.2E-65187IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166616.5245287IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-105386IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.732115159IPR014977WRC domain
PfamPF088798.0E-18116155IPR014977WRC domain
PROSITE profilePS5166720.622304348IPR014977WRC domain
PfamPF088791.3E-16306343IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MASFNAMTQG KGKEDEITKK ERSPPSIELS LGYGGSSHVI EEEEKSAKSK SLFTAAQFQE  60
LQLQAVIFKY IFSGLPVPFH LFFIIWSSVS SSLVDGGIYK LYPTLGRFDY SSMTDPEPGR  120
CRRTDGKKWR CKKDVIPGQK YCGPHMHRGR RSRKPVEPSE YVMRSDDTSI GSKRSKLYAS  180
SDDPGSKCAP ASSKTSCLSS TSRNYQNNSI EYSSATPRFS NSGNGSEKQD SHMTCNIKDT  240
TNCIKTPSFI AGDNADSKNI DFSHISASKT NQNHNCGDAR NDGALVPIFG TSTKSDLQPT  300
TGSETEPQRC RRSDGKKWRC SKKVVPCQKY CETHMHRGAN RKKLASVSVV FPPSKPSSYM  360
FCPPENDGTG RNLNSSLSIY AIAARQNITD DDSYSNSISD ATTITDEIPA FVSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339771.10.0PREDICTED: growth-regulating factor 9
TrEMBLM1AYU10.0M1AYU1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000332460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77981922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.13e-33growth-regulating factor 9