PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G430500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | AP2 | ||||||||
Protein Properties | Length: 450aa MW: 47792.4 Da PI: 7.1788 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.1 | 1.4e-10 | 165 | 221 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ +++r + g ++ +++Aa+a++ a++k++g Sevir.9G430500.1.p 165 SIYRGVTRHRWTGRYEAHLWDN-TcRKegQKRRGRQGGYDKEDKAARAYDIAALKYWG 221 57*******************3.334565667777799***99*************97 PP | |||||||
2 | AP2 | 51.2 | 3.2e-16 | 264 | 316 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a++k++ge Sevir.9G430500.1.p 264 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAALKFRGE 316 57****************988532...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.60E-18 | 165 | 229 | No hit | No description |
SuperFamily | SSF54171 | 6.54E-15 | 165 | 230 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.8E-7 | 165 | 221 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-12 | 166 | 230 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.846 | 166 | 229 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-19 | 166 | 235 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 167 | 178 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.85E-11 | 264 | 325 | No hit | No description |
Pfam | PF00847 | 8.6E-11 | 264 | 316 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.47E-18 | 264 | 324 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.0E-19 | 265 | 323 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-33 | 265 | 329 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.414 | 265 | 323 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 305 | 325 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MSPTTNGAIS LGRLGYALAM GAGALPDQLL LPFDDGFTDE DLLAADAALL GGAAADQTLL 60 LLPLCPGASG CGGSPSAEGL GAQAAPASSE ITTAVPAVGA GSFSLARQSA PAPAPASWEV 120 TTAVAADGGG GSPAPAPAPA PAPAPAPAPP SPGLPLVHNT SNRTSIYRGV TRHRWTGRYE 180 AHLWDNTCRK EGQKRRGRQG GYDKEDKAAR AYDIAALKYW GFNATTNFPR ENYIREIEEM 240 QNMARQDVVA SLRRNSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFATEE 300 EAAEAYDIAA LKFRGENAVT NFEPSRYNLR EIAQREIPIL SPGRRLNEKP APEAECQAVL 360 SAPSFSQSQQ SSNSLPPYFL PNLQQPHPQP PQLPLAQPLP IYNYGSGFGF GYGEPSFYWP 420 YGSVEQKVQL DSKLEIVNGL LQLAKSAAN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G430500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT070198 | 0.0 | BT070198.1 Zea mays full-length cDNA clone ZM_BFc0189L07 mRNA, complete cds. | |||
GenBank | KJ727594 | 0.0 | KJ727594.1 Zea mays clone pUT5454 AP2-EREBP transcription factor (EREB26) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984592.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q5YGP7 | 1e-100 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | K4AM93 | 0.0 | K4AM93_SETIT; Uncharacterized protein | ||||
STRING | Si040030m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13579 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 2e-79 | AINTEGUMENTA-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G430500.1.p |