PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G394300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GeBP
Protein Properties Length: 288aa    MW: 31813 Da    PI: 9.0604
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G394300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573104.11.2e-3218117297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqki 88 
                         lfqrlw++eDeiv+L+++ +f+a++g+   +++ d++ fye ++++++  ++k+qlveKirrLK+K++++v++ +  g  ++f+++h+q i
  Sevir.9G394300.1.p  18 LFQRLWTDEDEIVILRAFAEFTAQRGTsfASHQyDTTPFYEDMRRRLHTGFTKNQLVEKIRRLKRKYRNCVERlRVAGAGFTFRSPHEQAI 108
                         79*************************8867778***************************************88899************* PP

              DUF573  89 felskkiWg 97 
                         fe+++ iW+
  Sevir.9G394300.1.p 109 FEIARTIWR 117
                         ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.7E-3019116IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MFPTVDDPSA AGAMRRPLFQ RLWTDEDEIV ILRAFAEFTA QRGTSFASHQ YDTTPFYEDM  60
RRRLHTGFTK NQLVEKIRRL KRKYRNCVER LRVAGAGFTF RSPHEQAIFE IARTIWRPDS  120
DKHGRDSDDE GGASGANAHD GPLAIIDAVA PNGESTKSPT SRPRRGRRRR TGDFPADAAA  180
ETLALPQAPM PVMAEDALPT AENPILAALF KEMVRAMLSI GGGGGAAPMG LEPPPAIAGL  240
PMEGEKWRQQ RIRELEVYLR RIDLLQDQAR AALEELRSAP HAGGMNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G394300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0876801e-159BT087680.1 Zea mays full-length cDNA clone ZM_BFb0156A22 mRNA, complete cds.
GenBankEU9542301e-159EU954230.1 Zea mays clone 1459363 hypothetical protein mRNA, complete cds.
GenBankJX4285201e-159JX428520.1 Zea mays subsp. mays clone pUT3119 GBP18 GeBP type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794014.11e-159probable transcription factor At3g04930
TrEMBLA0A368SQE61e-164A0A368SQE6_SETIT; Uncharacterized protein
STRINGSb01g034370.11e-147(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-41DNA-binding storekeeper protein-related transcriptional regulator