PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G383800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 341aa    MW: 36345.3 Da    PI: 7.0723
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G383800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.2e-14162206554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h ++Er+RR++iN++f eL  ++P +     kK++Ka+iL  A++Y+k+L
  Sevir.9G383800.1.p 162 HIIAERKRREKINQRFVELSAVIPGL-----KKMDKATILSDATRYVKEL 206
                         899***********************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.732157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-15162210No hitNo description
Gene3DG3DSA:4.10.280.108.2E-17162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-11162206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-16162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-14163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.719267340IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEDSILFMQW AMNTLQHEHP APAVVDEATS PSLQPLPEAS YAAETVQESL ITAAHAHAAA  60
TGWSSRDTTT RGGHVLTNSA WHAAPTGGSS GSGTNNLPVN WNFSAVSAEL ASDGTPETPI  120
FTTKRGLPEL AAYGSPMPLI RRAGLKSTGS TPTSSAPYAH DHIIAERKRR EKINQRFVEL  180
SAVIPGLKKM DKATILSDAT RYVKELREKL NARDAGGVVI RSSGTVVLVK RQCYAPPDDE  240
GAPLWAPAAV RKPLPEIDVQ LSGNNVMVRV LCENGKGVVA RVLAEVEDLH LSIVDASVIP  300
FPACALNITI TAKVEATFIV TAEEIIGRVS SALSQQQHRK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170ERKRRE
2166171RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G383800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071901e-48AK107190.1 Oryza sativa Japonica Group cDNA clone:002-125-A03, full insert sequence.
GenBankHQ8588621e-48HQ858862.1 Oryza sativa Japonica Group isolate UT1671 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984147.30.0transcription factor bHLH18-like
TrEMBLA0A368SPZ40.0A0A368SPZ4_SETIT; Uncharacterized protein
STRINGPavir.Ia03339.1.p1e-110(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-40bHLH family protein