PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G139800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 157aa    MW: 16972.3 Da    PI: 11.2853
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G139800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1315.6e-1059101547
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                         +r rr+++NRe+ArrsR+RK+ +++eL+  ++++e  +++L+ 
  Sevir.9G139800.1.p  59 QRLRRRISNRESARRSRARKQRRLDELRGSAAVMERRRRELAA 101
                         799********************************99999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.6E-654119IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.0945799IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.7E-560108No hitNo description
SuperFamilySSF579597.5E-760105No hitNo description
PROSITE patternPS0003606277IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDFSDYYCID MHGFSEVAPP QFEFGSELTA IPFPTETPAA SSLEVVAADA AAAGCDDGQR  60
LRRRISNRES ARRSRARKQR RLDELRGSAA VMERRRRELA ACAQAARGRL ALVRLANAGL  120
RAEAAALSRR LAAASRALAL GRLYHAAALQ PRVPGH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17178RRSRARKQ
29297ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G139800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986317.11e-104ocs element-binding factor 1
TrEMBLA0A368SI791e-103A0A368SI79_SETIT; Uncharacterized protein
STRINGSi039558m2e-81(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2097457