PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.9G039900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 444aa MW: 48017.9 Da PI: 6.9442 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 87.1 | 3.3e-27 | 223 | 355 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......tksgyWkatg 87 +G+rF+Ptdeel+ +yL+ k +g+k+++ +++k++d+y+ +P++ ++++ + wy Fs+r++ky++g r+ r+ ++ gyWk+ Sevir.9G039900.1.p 223 AGVRFQPTDEELI-FYLRLKHAGHKMPV-DFFKDFDVYHEHPETSRAACGVVNGCWYAFSPRNRKYKNGGRPARSvfdasgVQVGYWKSNT 311 7************.**************.99*************98666666679*******************7688888889******* PP NAM 88 kdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 k +vl+ +g+lvg ++L+f+ g++pkg++t W m+ey++ Sevir.9G039900.1.p 312 KLAPVLAGgkaDGALVGEVTSLTFHLGQQPKGTQTPWKMKEYAI 355 ******976666667***************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 34.108 | 221 | 380 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.32E-35 | 223 | 380 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.8E-15 | 223 | 354 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MAEPPYYWHP QTQPGFPPRF APVPLPFAQG VMPPPVPVPV QITRAEPSYY HPQIQGSVAS 60 GSAAEAAAIV HAVPDTQKAQ EATAPAHRRR GRPRKTDTAA VAAAKPVIKK PKRATVRSSR 120 AAAPQPTGSS VAGSATMAGQ VQIHQQQDQA ASSVVEFQVQ HPDQAASVIA VATSSQQTAP 180 CTTNPMALLC DQEQWQLQPS CSNILSAGDQ AAAAGPYADT SVAGVRFQPT DEELIFYLRL 240 KHAGHKMPVD FFKDFDVYHE HPETSRAACG VVNGCWYAFS PRNRKYKNGG RPARSVFDAS 300 GVQVGYWKSN TKLAPVLAGG KADGALVGEV TSLTFHLGQQ PKGTQTPWKM KEYAIPQNQH 360 APDGSAMRLN DWVVCKLFYK ERVIKNAAAE EDQLSEAGEN DVWAEGDEGT WRVPVVQTLG 420 NSEQDLCVDY QIETNADDYL PWI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-23 | 224 | 381 | 18 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 94 | RRGRPRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.9G039900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | K4AKM0 | 0.0 | K4AKM0_SETIT; Uncharacterized protein | ||||
STRING | Si039443m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13130 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 2e-26 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.9G039900.1.p |