PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G131700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | SBP | ||||||||
Protein Properties | Length: 318aa MW: 33562.3 Da PI: 8.845 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.2 | 3.6e-41 | 78 | 154 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls+++eyhrrh+vCe+hsk+pvv+v g+eqrfCqqCsrfh+lsefDe+k+sCr+rL++hn+rrrk+q+ Sevir.8G131700.1.p 78 CSVDGCRSDLSRCREYHRRHRVCEAHSKTPVVVVGGQEQRFCQQCSRFHMLSEFDEGKKSCRKRLDGHNRRRRKPQH 154 **************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.4E-33 | 71 | 139 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.274 | 75 | 152 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.84E-39 | 77 | 157 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.0E-30 | 78 | 151 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MDWAAASGAP SWGAAAASDP GPTMLSFAGP SSSAAAAAAE ARLQDFAAGL AQRARPVGAA 60 GGGRRSRSAG GGGGAEACSV DGCRSDLSRC REYHRRHRVC EAHSKTPVVV VGGQEQRFCQ 120 QCSRFHMLSE FDEGKKSCRK RLDGHNRRRR KPQHDLTNLG GFIPYHQVNQ FEIYPQTTPT 180 VRENSDTMHL VHRQPPFSIS FSRTPKQLPF PQDGGGMLSA SHHGHFLVED SNHTGSSACN 240 NTLGPKCALS PLSSSLHHPS PAGQAQVASA LSRIASASQQ VATAAVTAAF ASGGSHHVFV 300 PDAVLEDPSQ ALPFPWQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-27 | 69 | 151 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 151 | KKSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G131700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004979310.1 | 0.0 | putative squamosa promoter-binding-like protein 19 | ||||
Refseq | XP_004979311.1 | 0.0 | putative squamosa promoter-binding-like protein 19 | ||||
Refseq | XP_012703492.1 | 0.0 | putative squamosa promoter-binding-like protein 19 | ||||
Refseq | XP_022684594.1 | 0.0 | putative squamosa promoter-binding-like protein 19 | ||||
Swissprot | Q2R3Y1 | 6e-93 | SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19 | ||||
TrEMBL | K3ZJA3 | 0.0 | K3ZJA3_SETIT; Uncharacterized protein | ||||
STRING | Si026656m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12961 | 25 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 7e-40 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G131700.1.p |