PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G084000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 139aa    MW: 15136 Da    PI: 6.9456
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G084000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-053658123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k F ++  L  H++ H
  Sevir.8G084000.1.p 36 FSCSYCDKKFYTSQALGGHQNAH 58
                        89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.35E-73463No hitNo description
PROSITE profilePS5015711.4483663IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.9E-43661IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MDPAGEDGGA ETQLDLNLSL RPSLELQMEM EPQGYFSCSY CDKKFYTSQA LGGHQNAHKL  60
ERSIAKRSLQ RAAAHRHAAG LGGYGGAVDK EEARERRGKE PRISAQVMTP SSSNPMRALL  120
EAGEKDFTDK IIDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G084000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980324.14e-97zinc finger protein 7
TrEMBLA0A368S5N79e-96A0A368S5N7_SETIT; Uncharacterized protein
STRINGSi028367m3e-93(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-15zinc finger protein 2