PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.8G022300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | G2-like | ||||||||
Protein Properties | Length: 379aa MW: 41216.3 Da PI: 6.8648 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.7 | 8.3e-31 | 95 | 148 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +F++av++LGG+++AtPk +l+lm+vkgL++ hvkSHLQ+YR+ Sevir.8G022300.1.p 95 PRLRWTPELHLCFLRAVDRLGGQDRATPKLVLQLMNVKGLSIGHVKSHLQMYRS 148 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.915 | 91 | 151 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-29 | 91 | 149 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.72E-15 | 92 | 149 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-23 | 94 | 150 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.2E-9 | 96 | 147 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MHPASIHPSR MEASGKGLDS STMDHQLQSS SGEAEEEEED AAADMPPGGG RDGSSASNSS 60 TVELLDEAGG GGGDSSRNPS SSSSSVRPYV RSKNPRLRWT PELHLCFLRA VDRLGGQDRA 120 TPKLVLQLMN VKGLSIGHVK SHLQMYRSKK IDDSGQVIGG SWRDDHELQE GGRQVYNLGR 180 LSLHHAQTTG ATTLLSARFG AWPHYWNWLH GHHHLLGSKP YYSSAAEADV FLTTRAHQYV 240 ARATCSSAPA SILQGRSSYH QNDQFIRPLL RDEDSGNHNH HDPLDLELAL DIGPRRQDNK 300 RIKRSSSGCS WGREDEENAA RDNDQQVLES ATDTGLSLSL FSSYPPPFVR TGSGAALGVN 360 MDKGKAHPTR TSTLDLTI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-17 | 96 | 150 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-17 | 96 | 150 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-17 | 96 | 150 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-17 | 96 | 150 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.8G022300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068440 | 1e-102 | BT068440.1 Zea mays full-length cDNA clone ZM_BFb0191O11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012703832.1 | 0.0 | uncharacterized protein LOC101780885 | ||||
TrEMBL | A0A368S3K7 | 0.0 | A0A368S3K7_SETIT; Uncharacterized protein | ||||
STRING | Si026524m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4408 | 36 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 7e-39 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.8G022300.1.p |