PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB

Protein Properties

Length: 260aa MW: 28628.9 Da PI: 10.2563

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.7G290400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	2.9e-16	24	69	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed++l ++v+ +G+ +W++Ia+++ gR++k+c++rw++ Sevir.7G290400.1.p 24 RGHWRPGEDDKLRQLVENYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 69 899***************************.*********996 PP
2	Myb_DNA-binding	56.1	8.5e-18	76	120	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+ E+e+l++a++ +G++ W++I+r ++ gRt++ +k++w+ + Sevir.7G290400.1.p 76 RRPFTAAEEERLLQAHRAHGNR-WALISRLFP-GRTDNAVKNHWHVV 120 679*****************.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.731	19	70	IPR017930	Myb domain
SuperFamily	SSF46689	7.86E-29	22	117	IPR009057	Homeodomain-like
SMART	SM00717	6.6E-13	23	72	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.5E-26	25	77	IPR009057	Homeodomain-like
CDD	cd00167	5.17E-13	27	68	No hit	No description
Pfam	PF13921	4.4E-16	27	87	No hit	No description
PROSITE profile	PS51294	26.044	71	125	IPR017930	Myb domain
SMART	SM00717	2.2E-15	75	123	IPR001005	SANT/Myb domain
CDD	cd00167	2.16E-12	78	121	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-20	78	123	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MAPSSSTTAT PVRANSRPPS SCPRGHWRPG EDDKLRQLVE NYGPQNWNSI AEKLEGRSGK 60 SCRLRWFNQL DPRINRRPFT AAEEERLLQA HRAHGNRWAL ISRLFPGRTD NAVKNHWHVV 120 MARRSHHHHR SAGTLALLAG SVYSPPPRRP PFQCFHFGAP PAAMKTTGSL SLCFATPGSG 180 PSSSLSSPGT FSVIRNCNVP TTVAFSSSRE VAATPDDHRH DMGRDDHGHR KDDDEDGDGT 240 ASKRKDVDVP FFDFLGVGI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-30	24	124	4	104	MYB PROTO-ONCOGENE PROTEIN
1mse_C	2e-30	24	124	4	104	C-Myb DNA-Binding Domain
1msf_C	2e-30	24	124	4	104	C-Myb DNA-Binding Domain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.7G290400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU972498	1e-105	EU972498.1 Zea mays clone 382267 myb-like DNA-binding domain containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978299.1	0.0	transcription factor MYB52
TrEMBL	A0A368S0I0	0.0	A0A368S0I0_SETIT; Uncharacterized protein
STRING	Si011791m	1e-174	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP294	38	260

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	6e-60	myb domain protein 52

Link Out ? help Back to Top
Phytozome	Sevir.7G290400.1.p