PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G258700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 782aa    MW: 84463.4 Da    PI: 5.3555
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G258700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-20105161157
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  Sevir.7G258700.1.p 105 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 161
                         688999************************************************995 PP
2START203.96.5e-642985191206
                         HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
               START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                         ela +a++elv++a+++ep+W         e +n++e+ + f+++ +      ++ea+r+s vv+m++a+lve+l+d++ q+ + +     
  Sevir.7G258700.1.p 298 ELAVAAMEELVRMAQLDEPLWNAPGldgssETLNEEEYSRMFPRGLGpkqygLKSEASRDSSVVIMTHANLVEILMDVN-QYATVFSsivs 387
                         57899****************9866777889***********998889*******************************.88888888888 PP

                         EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
               START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
                         +a+tlev+s+g      galq+m+ e+q++splvp R+++fvRy++q  +g+w++vdvS+ds ++ +    v +++++pSg+li++++ng+
  Sevir.7G258700.1.p 388 RAATLEVLSTGvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQNADGTWAVVDVSLDSLRPGS----VLKCRRRPSGCLIQEMPNGY 474
                         *****************************************************************97....8******************* PP

                         EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         skvtwvehv++++r++h +++ lv+sgla+ga++wv tl+rqce+
  Sevir.7G258700.1.p 475 SKVTWVEHVEVDDRSVHDIYKLLVNSGLAFGARRWVGTLDRQCER 519
                         *******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-2290160IPR009057Homeodomain-like
SuperFamilySSF466897.94E-2090162IPR009057Homeodomain-like
PROSITE profilePS5007116.989102162IPR001356Homeobox domain
SMARTSM003896.2E-20103166IPR001356Homeobox domain
CDDcd000861.46E-19105163No hitNo description
PfamPF000464.2E-18105160IPR001356Homeobox domain
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PROSITE profilePS5084841.854289522IPR002913START domain
SuperFamilySSF559613.41E-36290521No hitNo description
CDDcd088752.04E-123293518No hitNo description
SMARTSM002348.5E-60298519IPR002913START domain
PfamPF018526.9E-53299519IPR002913START domain
Gene3DG3DSA:3.30.530.201.0E-5360515IPR023393START-like domain
SuperFamilySSF559612.35E-24540771No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MMIPARHMPS MMIGRNSAAA AYGSSSALSL GQPNLLDNPQ LQQALQQQHL LDQIPATTAE  60
SGDDMMRGGR GSDPLGDEFE SKSGSENVDG VSVDDQDPNQ RPSKKKRYHR HTQHQIQEME  120
AFFKECPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK NQHERQENSQ LRADNEKLRA  180
ENMRYKEALS SASCPNCGGP AALGEMSFDE HHLRIENARL REEIDRISAI AAKYVGKPMV  240
SFPVLSSPLA AARASTLDIG VGAGAYGATD IFGSVTAGAG ELLRGAVQSD ADKPMIVELA  300
VAAMEELVRM AQLDEPLWNA PGLDGSSETL NEEEYSRMFP RGLGPKQYGL KSEASRDSSV  360
VIMTHANLVE ILMDVNQYAT VFSSIVSRAA TLEVLSTGVA GNYNGALQVM SVEFQVPSPL  420
VPTRESYFVR YCKQNADGTW AVVDVSLDSL RPGSVLKCRR RPSGCLIQEM PNGYSKVTWV  480
EHVEVDDRSV HDIYKLLVNS GLAFGARRWV GTLDRQCERL ASVMASNIPT SDIGVITSTE  540
GRKSMLKLAE RMVMSFCGGV TASAAHQWTT LSGSGAEDVR VMTRKSVDDP GRPPGIVLNA  600
ATSFWLPVPP KRVFDFLRDE SSRSEWDILS NGGVVQEMAH IANGRDHGNC VSLLRVNSTN  660
SNQSNMLILQ ESCTDASGSY VIYAPVDVVA MNVVLNGGDP DYVALLPSGF AILPDGPAGG  720
NMQGDGGVGS GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN SLIACTVERI KAAVSGESNP  780
Q*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G258700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0672590.0BT067259.1 Zea mays full-length cDNA clone ZM_BFb0357I11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976894.10.0homeobox-leucine zipper protein ROC2
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLK3Y5C10.0K3Y5C1_SETIT; Uncharacterized protein
STRINGSi009409m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]