PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G176900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 346aa MW: 37067.7 Da PI: 6.4098 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.9 | 3.6e-13 | 158 | 204 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR++i +++ eL +++P + +K +Ka+iL Av+Y+k+Lq Sevir.7G176900.1.p 158 DHTISERKRREKISQRLIELSTVIPGL-----TKTDKATILGDAVRYVKELQ 204 599***********************9.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.288 | 154 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-15 | 158 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-10 | 158 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-15 | 158 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.56E-14 | 159 | 208 | No hit | No description |
SMART | SM00353 | 3.1E-14 | 160 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MDDSGLFMQW ALSTLQEQQE PPPVPAADDS GSEVTIVSLP DQFGHPASPD CTVPGRPPVL 60 EARRWAATSW SAGDTNSGSD GGGNAPVPVP AMERDGLSPS LDSVKRATAA TLTGSVGSGT 120 SQPMRWDFSH SASPRLSNEV MPINYAATAR SSAPYARDHT ISERKRREKI SQRLIELSTV 180 IPGLTKTDKA TILGDAVRYV KELQEKLRVL EDGSRKNGRS FSPVLAKKPR IATPNDEDAV 240 LPSYPPAASN AEIDARISGD NVTVRIHCKD AKGVLVKLLT EVEGLHLSII DTNVMPFLEC 300 TLIINIMAKV EEGFNSKPDD IVGSLKSALH QHGTRNSTQE KRSSG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 162 | 167 | ERKRRE |
2 | 163 | 168 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G176900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022684464.1 | 0.0 | transcription factor bHLH18-like | ||||
TrEMBL | K3YBW5 | 0.0 | K3YBW5_SETIT; Uncharacterized protein | ||||
STRING | Si011709m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 7e-38 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G176900.1.p |