PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G160300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 380aa    MW: 40211.8 Da    PI: 6.3227
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G160300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.25.4e-11177235563
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l +l+   + l+se+
  Sevir.7G160300.1.p 177 KRAKRILANRQSAARSKERKMRYIAELERKVQTLQSEATTLSAQLAMLQRDTSGLTSEN 235
                         9************************************************9999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-17173237IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.208175238IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.91E-11177231No hitNo description
Gene3DG3DSA:1.20.5.1703.1E-11177232No hitNo description
PfamPF001703.7E-9177235IPR004827Basic-leucine zipper domain
CDDcd147032.48E-25178227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDPAPPVDPA ASCSASTSAS AAAPGDVAAM LPDSPPRRGA GHRRAQSEIL LGGAALPDDL  60
TFDADLGVVG EACGAGDEDE EDYDEDEEAG GGAGGSRMFE MFLENGGTLP GTPVPSAHPH  120
PAATPPPRPR HQHSMSMDGS TSLLGSASAG TPGRAGADAK KAISDAKLAE LALVDPKRAK  180
RILANRQSAA RSKERKMRYI AELERKVQTL QSEATTLSAQ LAMLQRDTSG LTSENSDLKI  240
RVQTMEQQVR LQDALNDRLR DEIQQLKIAT GQVNANIGKM GSFGLSTFGG NPQSFQRSHI  300
QSLLAAQQLQ QLQIHSQHQQ QQTHLQKQQQ QQHLSTAQQH QLLQEALPFP GDLKMKGLAL  360
PSHAPNAGAS DNHAVKSEP*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G160300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976085.10.0transcription factor RF2a-like
SwissprotQ040882e-90POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A368RW530.0A0A368RW53_SETIT; Uncharacterized protein
STRINGGRMZM2G112483_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123022937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.12e-60bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]