PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G153700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 344aa    MW: 36719.5 Da    PI: 7.5473
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G153700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.3e-12274319655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+ l+P+     +k  s a++L +Av++I+ Lq
  Sevir.7G153700.1.p 274 SIAERERRTRISEKLRKLQALVPNM----DKQTSTADMLDLAVDHIRGLQ 319
                         689*********************7....688****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.475268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-16271336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.94E-13272323No hitNo description
Gene3DG3DSA:4.10.280.101.5E-14273332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-13274324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9274319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDPPPPPRAR LRYGSGGSAQ QGGQQFPFVV DPTEAVGAAA VRAFFPAPDG GEPPPPSSGD  60
RAPGQERYGG HGEISLGHGQ GVHHHRYHQF GVEGKQLDGG PAAAPLPRHS SSPPGFFSSP  120
VVDNGFPSAR AGVGVGGDVH HATSSYHKKM KSPMNLAGQG TLSHISEDGI PDLTNNVYGS  180
GHSEENITTN SVARSSNGFS IGTWEDSNSI VFSNPASNAG IHNNDDIIAS LSNYELQFGA  240
TKETSGMDKY LQMQQDQVPF RVRAKRGCAT HPRSIAERER RTRISEKLRK LQALVPNMDK  300
QTSTADMLDL AVDHIRGLQS ELQALKQDKE QCTCRGNHHP SGR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G153700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680391e-79AK068039.1 Oryza sativa Japonica Group cDNA clone:J013131B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978091.20.0transcription factor bHLH128
TrEMBLK3Y8H10.0K3Y8H1_SETIT; Uncharacterized protein
STRINGSi010513m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141882026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-44bHLH family protein