PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G252200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 165aa    MW: 16837.7 Da    PI: 9.2406
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G252200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000385173123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C + F ++  L  H++ H
  Sevir.6G252200.1.p 51 FSCTYCRRKFFSSQALGGHQNAH 73
                        89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.18E-64878No hitNo description
PROSITE profilePS5015710.9285178IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MEKQQPAGDD VVNLDLRLIH PSAAAASRGV GGRHRDLPPA AAAAADPDRT FSCTYCRRKF  60
FSSQALGGHQ NAHKLERSLA KRSRELSGAV AAGAAISSSS SVGAAAASEL GSWYPAAHAR  120
GAGDQAAAAA AVVSWIADGG RRHAYHRVQA AAGDADDIDL SLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G252200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039282e-45AP003928.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1150_A11.
GenBankAP0054802e-45AP005480.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0439B07.
GenBankAP0149642e-45AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126162e-45CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683546.11e-112zinc finger protein GIS3
TrEMBLA0A368RQA41e-110A0A368RQA4_SETIT; Uncharacterized protein
STRINGPavir.Fb02284.1.p4e-58(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.14e-18zinc finger protein 2