PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G240200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 28026.4 Da PI: 5.6086 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.6 | 4e-07 | 96 | 139 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RRd +f eLr +P+ + +Ka+ L A YI +L Sevir.6G240200.1.p 96 SHVEAERQRRDX--RRFCELRAAVPTV-----SRFDKASLLSDAATYITQL 139 799********7..99**********6.....49***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-11 | 86 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.458 | 90 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.88E-8 | 95 | 144 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.7E-10 | 96 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-4 | 96 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-4 | 98 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MDELVCPASS SSSPSSASFF STAGHHQELE FMPCDVLEGL LGDEDWIDEA PDGVTLGYEG 60 SSARSPGNDL PGEPPAPEPK RRGRRPGPRS DAPVLSHVEA ERQRRDXRRF CELRAAVPTV 120 SRFDKASLLS DAATYITQLR DRVKQLEAET RRAAMTSAAA AAPAMAATSS LGVQAEELEL 180 EVRMVGGEAA ALRLTTAVRH RHAPARFMLA LRSLDLPVQH ACVCLVGGAT VQDAVVDVPA 240 GLRDEHGLRA ALLHMLQQTG W* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G240200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974090.1 | 1e-143 | transcription factor bHLH14 | ||||
TrEMBL | K3YLE9 | 1e-141 | K3YLE9_SETIT; Uncharacterized protein | ||||
STRING | Si015072m | 1e-142 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 3e-21 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G240200.1.p |