PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G240000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 229aa MW: 24418 Da PI: 10.6563 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.3 | 1.8e-10 | 80 | 125 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h +Er+RRd++ f eLr P+ +++Ka+iL A+ YI +L Sevir.6G240000.1.p 80 SHVDAERQRRDKLYRLFCELRAAAPTV-----SRMDKASILADATAYIAEL 125 7999**********************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.54E-14 | 74 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.63 | 76 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-12 | 80 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.25E-9 | 80 | 130 | No hit | No description |
Pfam | PF00010 | 8.6E-8 | 80 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-7 | 82 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MGLSSPPPPA GLPPRRPPSP LPATTRCSSS PHARSWGNGG RVTSGCMSPW VAPRRATGAR 60 ARWIRGRKPG APRTDEPAIS HVDAERQRRD KLYRLFCELR AAAPTVSRMD KASILADATA 120 YIAELRGRVE QLEAKARDAV ARHGAPPSTP AMTTASHSFS SLEDEGKLEV RMVGPEAAAR 180 HAPARLMDAL LSLDLPVRHA CICRVGGVTV QDAVVDVHRA LLDCHGIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 5e-15 | 75 | 135 | 4 | 63 | Transcription factor MYC2 |
5gnj_B | 5e-15 | 75 | 135 | 4 | 63 | Transcription factor MYC2 |
5gnj_E | 5e-15 | 75 | 135 | 4 | 63 | Transcription factor MYC2 |
5gnj_F | 5e-15 | 75 | 135 | 4 | 63 | Transcription factor MYC2 |
5gnj_G | 5e-15 | 75 | 135 | 4 | 63 | Transcription factor MYC2 |
5gnj_I | 5e-15 | 75 | 135 | 4 | 63 | Transcription factor MYC2 |
5gnj_M | 5e-15 | 75 | 135 | 4 | 63 | Transcription factor MYC2 |
5gnj_N | 5e-15 | 75 | 135 | 4 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G240000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP097341 | 4e-51 | FP097341.1 Phyllostachys edulis cDNA clone: bphylf031p01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683541.1 | 1e-105 | transcription factor MYC2-like | ||||
TrEMBL | A0A368RPV7 | 1e-105 | A0A368RPV7_SETIT; Uncharacterized protein | ||||
STRING | Sb07g025310.1 | 1e-55 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46760.1 | 2e-27 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G240000.1.p |