PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G384200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | G2-like | ||||||||
Protein Properties | Length: 240aa MW: 25075.8 Da PI: 6.5094 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.7 | 6.4e-29 | 136 | 189 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++WtpeLH+rFveav++L G + A+Pk+i++lm+v+gLt+e+v+SHLQkYR+ Sevir.5G384200.1.p 136 KARMVWTPELHHRFVEAVAHL-GDKGAVPKAIVRLMNVEGLTRENVASHLQKYRI 189 68*******************.999*****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.201 | 133 | 192 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.66E-19 | 134 | 193 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.6E-29 | 135 | 193 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-24 | 136 | 189 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.3E-10 | 138 | 188 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MLSPRGGRPH DATARAPSSS SSPPRQHAGM GAGAGGASGR VLEWEAGLPA ASELTPVSHP 60 LITPALAAAF RINIAGGAFA AASPFDDSPL AHDSPTSHLS LSCDEEDDDD EDEEGETEDA 120 AASGSGACRG GRAGKKARMV WTPELHHRFV EAVAHLGDKG AVPKAIVRLM NVEGLTRENV 180 ASHLQKYRIY LKRTRNPAAP QPAPHFPTAY GSPFNLQPPS DPSSRSGYCA FPSRDSEKL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 5e-27 | 136 | 192 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G384200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066659 | 2e-89 | AK066659.1 Oryza sativa Japonica Group cDNA clone:J013068K17, full insert sequence. | |||
GenBank | AP003251 | 2e-89 | AP003251.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0446B05. | |||
GenBank | AP014957 | 2e-89 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 2e-89 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970554.1 | 1e-171 | transcription factor PCL1 | ||||
TrEMBL | A0A368RD64 | 1e-169 | A0A368RD64_SETIT; Uncharacterized protein | ||||
TrEMBL | K3XJE3 | 1e-168 | K3XJE3_SETIT; Uncharacterized protein | ||||
STRING | Si002016m | 1e-168 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1620 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59570.1 | 6e-27 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G384200.1.p |