PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.5G292700.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 400aa MW: 41045.1 Da PI: 6.5984

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G292700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.5	3.7e-06	290	330	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P K++ a++L +A Y+k L Sevir.5G292700.1.p 290 ARLRRERVSERLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 330 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.00E-10	272	335	No hit	No description
PROSITE profile	PS50888	14.449	281	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-12	287	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.8E-13	287	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.9E-10	290	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MDATFGWAGA GHHVDDYFSR QVGCGRFEVD EAFLGDCFGQ LQCDGVLAAA AAGGGDTGAC 60 HVTSNCGAFE GSAGIDSDPL AFLGAGTGDV FDAGLLDAAL AFTRELGEGC ADGGAVSNGA 120 MLSSYSGTTG GNISSGESNN YSGGHEAEVV SPTSTMSPTT APRPFTHASS SQQQALHAKR 180 KVTDEYPASI ATTAPPPAPF PRPGGGANKR RAATSISFGH GAQHSARDAA ASAGYEPDME 240 AMAQVKEMIY RAAAMRPVNL GPEISTAAAA TEKPRRKNVR ISSDPQTVAA RLRRERVSER 300 LRVLQKLVPG GSKMDTASML DEAASYLKFL KSQVQALETL GTTNTSSTSA SSRSQHYSYF 360 GSGSGSNPGF PGFGRRSSSI SPSGYVNPNG STNTSSNLL*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MDATFGWAGA GHHVDDYFSR QVGCGRFEVD EAFLGDCFGQ LQCDGVLAAA AAGGGDTGAC  60
HVTSNCGAFE GSAGIDSDPL AFLGAGTGDV FDAGLLDAAL AFTRELGEGC ADGGAVSNGA  120
MLSSYSGTTG GNISSGESNN YSGGHEAEVV SPTSTMSPTT APRPFTHASS SQQQALHAKR  180
KVTDEYPASI ATTAPPPAPF PRPGGGANKR RAATSISFGH GAQHSARDAA ASAGYEPDME  240
AMAQVKEMIY RAAAMRPVNL GPEISTAAAA TEKPRRKNVR ISSDPQTVAA RLRRERVSER  300
LRVLQKLVPG GSKMDTASML DEAASYLKFL KSQVQALETL GTTNTSSTSA SSRSQHYSYF  360
GSGSGSNPGF PGFGRRSSSI SPSGYVNPNG STNTSSNLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	271	277	EKPRRKN
2	272	277	KPRRKN
3	290	295	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269\|PubMed:21549224}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G292700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK355455	1e-106	AK355455.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1020N05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012701869.1	0.0	transcription factor bHLH69
Swissprot	A0A0P0WQ90	5e-50	LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBL	K3XIM1	0.0	K3XIM1_SETIT; Uncharacterized protein
STRING	Si001743m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sevir.5G292700.1.p

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]