PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G179800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 314aa    MW: 33023.9 Da    PI: 6.2845
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G179800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.31.6e-304107198
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqq 85 
                         +C++C+vlr++C++ C+++p++     p++q++++ +++k++G++ +l+ll+a+p ++ r+++++sl+yeA+ r+ +PvyG+vg+++++q+
  Sevir.5G179800.1.p   4 SCNGCRVLRKGCSDACTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAAPADHlRPAVFRSLLYEACGRIVNPVYGSVGLLWSGQW 94 
                         6*****************************************************88877******************************** PP

              DUF260  86 qleqlkaelallk 98 
                         q +q+++e++l +
  Sevir.5G179800.1.p  95 QACQAAVEAVLKG 107
                         *******998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.5493110IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-244103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDACT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAAPAD  60
HLRPAVFRSL LYEACGRIVN PVYGSVGLLW SGQWQACQAA VEAVLKGDPV VQVDAASEAA  120
AAPPLLGARA PGAAAYDIRH VAKDPDAAAA ADLHVARGGR TRFKRAAASS TCSKPHHKGK  180
VNNNKRASPS SPSRQHQEPE ELEPEPMVVE HDDGRAPSHD EESAGSHDHQ LQGSEDTDAE  240
AGSHVSQAEA EPQSQAAPVS SQVLGADPEE EEVGLELTLG FEPAAARQAK ARSARFDLSA  300
ASSLIGLRLE QPA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G179800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547641e-158EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds.
GenBankKJ7284041e-158KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817459.11e-146LOB domain-containing protein 40-like
SwissprotQ9M8863e-73LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1E5VG321e-169A0A1E5VG32_9POAL; LOB domain-containing protein 41
STRINGPavir.Eb02390.1.p1e-145(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-56LOB domain-containing protein 41