PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G055700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 519aa    MW: 54640.2 Da    PI: 7.6742
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G055700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.5e-10106132127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C +++rtG C +G+rC+++H++
  Sevir.5G055700.1.p 106 PGEADCGYYLRTGACGFGERCRYNHPR 132
                         57899********************96 PP
2zf-CCCH37.15.3e-12156181227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++ C +f++tGtCk+G++Ck++H++
  Sevir.5G055700.1.p 156 GQPVCEYFLKTGTCKFGSNCKYHHPK 181
                         7899********************96 PP
3zf-CCCH39.78.1e-13201226227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+++++tG+Ck+G++CkF+H++
  Sevir.5G055700.1.p 201 GEKECSYYMKTGQCKFGSTCKFHHPE 226
                         7899********************96 PP
4zf-CCCH391.3e-12354380127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++++rtG Ck+G++Ck++H++
  Sevir.5G055700.1.p 354 PGQPECQYYMRTGDCKFGATCKYNHPR 380
                         5789*********************96 PP
5zf-CCCH31.82.4e-10403426427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          +C ++a++G+C+yG  Ck+ H++
  Sevir.5G055700.1.p 403 QPCAYYAQNGYCRYGVACKYDHPM 426
                         69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-5105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.676105133IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-8107132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5109133IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-7154181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.577154182IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-10156181IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-6157183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-6159183IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812199227IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6199226IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10201226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6202226IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4205225IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-6353380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.263353381IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-10355380IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5357381IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4359380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892399427IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6399426IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5400428IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-8403426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-5403424IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MEPPHAEEAA AAGGGGGGGE GGRASPGTGL EGTLLCLRPF RCVQISGSAY SRADLRWIPG  60
VTDGVCVRVA RECVAVAGPM LRLGLDGGGE GEDGEREADA RLPERPGEAD CGYYLRTGAC  120
GFGERCRYNH PRDRGGTEFG GGTKNGAAPD FPERQGQPVC EYFLKTGTCK FGSNCKYHHP  180
KQDGSVQSVI LNNNGFPLRP GEKECSYYMK TGQCKFGSTC KFHHPEFGGI PVTPGIYPPL  240
QSASVPSPHT YAPLANWQMG RSPVVPGSYM PGSYTPMMLS SGMVPLQGWS PYPASVNPVA  300
SGGAQQTVQA GPLYGIGHHG SSATIAYGSP YMPYSSSTGQ SSNNHQEHGF PERPGQPECQ  360
YYMRTGDCKF GATCKYNHPR DWSAAKSNYM FSPLCLPLRP GAQPCAYYAQ NGYCRYGVAC  420
KYDHPMGTLG YSSSALPLSD MPIAPYPLSF SVATLAPSPS SPEYISTKDP SMNQVASPVA  480
APEPVGAVLP KGGFPPDTIM RTQTSTTGVG SSSPGGGR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G055700.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9688300.0EU968830.1 Zea mays clone 324384 zinc finger CCCH type domain-containing protein ZFN-like 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967811.10.0zinc finger CCCH domain-containing protein 6
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLK3XHD20.0K3XHD2_SETIT; Uncharacterized protein
STRINGSi001303m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-120C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]