PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G052000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Dof | ||||||||
Protein Properties | Length: 573aa MW: 62303.3 Da PI: 4.7853 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124 | 4.8e-39 | 194 | 252 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+ Sevir.5G052000.1.p 194 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKN 252 7899****************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-31 | 183 | 251 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.4E-32 | 196 | 252 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.891 | 198 | 252 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 200 | 236 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MSDQKDPGIK LFGRVIPLAP EPAPEATETE DPLGHDQPPE ELQPRAPEEE AAAVADEGQH 60 NEKEDTEDSE MEVDTPQEKG SEMKVDTPLE KGNEMKIDTP QEEKGNEMKF DASKKEQDGE 120 MKVDAQQEKK DEQMKVDAPP RAENIQPGTS PRSDHKKEDQ GQMNSTEDKA ASDPKGESEK 180 ANDESGQDKT LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKNCQR YWTAGGTMRN 240 VPVGAGRRKS KNAPLHYRQL LMAPDCMLGS RVDISKSVLP EALVSPPSAP VQPTSRNETV 300 LKFGPEVPLC ESLVSALNID EQNAKNPGSA PRGENREDNS CASAVTSYNG LPENTVHVDK 360 NGAPVYCNGV APVPQYYLGT PFMYPWSVGW NNLPVMVPGK SMPEAASASE SCSTSSAPWM 420 TSPMMPASTS PAFPYPLVPP ALWGCLSGWP ATTWNIPWVR TNGCVSPSSS SNSSCSGNGS 480 PTLGKHSRDS NPLKDEKQEK SLWVPKTLRI DDPDEAAKSS IWATLGIKPG DPGTFKPFQS 540 KVESKGQKAD AAQVLQANPA ALSRSQSFQE SS* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00046 | PBM | Transfer from AT5G39660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G052000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF299560 | 0.0 | KF299560.1 Miscanthus sacchariflorus clone Msac_GC_7 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967771.1 | 0.0 | cyclic dof factor 2 | ||||
TrEMBL | A0A368R1G2 | 0.0 | A0A368R1G2_SETIT; Uncharacterized protein | ||||
STRING | Si000689m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1434 | 38 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 8e-68 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G052000.1.p |