PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G299000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 191aa MW: 20172.8 Da PI: 9.5434 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00078 | 79 | 101 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C++ F + H+r+H Sevir.4G299000.1.p 79 YPCPICHRLFDAVKAVHGHQRSH 101 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.86E-7 | 78 | 149 | No hit | No description |
PROSITE profile | PS50157 | 8.974 | 79 | 101 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.032 | 79 | 103 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.54 | 79 | 101 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 81 | 101 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.4E-8 | 127 | 151 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.8 | 127 | 149 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.198 | 127 | 154 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 129 | 149 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MNGAQVFFYG VAYGQFLAGV GGGPGGDEPN RPWRPKSAHE ADAAPAAALR KKRPAASRNR 60 KKDHPAAAAA AGGEAAGPYP CPICHRLFDA VKAVHGHQRS HPERDWRGMA PPRPLPPVAA 120 DGKQYRYACD RCGAPFETRQ ALGGHRASHS GKMGCFSLSR QQPPAAVPPA AAPMPVFPFD 180 LNEPAPEQEE * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G299000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967303.1 | 1e-134 | zinc finger protein ZAT3 | ||||
TrEMBL | K3Y276 | 1e-133 | K3Y276_SETIT; Uncharacterized protein | ||||
STRING | Si008297m | 1e-134 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13010 | 27 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 8e-14 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G299000.1.p |