PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G232200.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 425aa    MW: 47102.3 Da    PI: 4.8951
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G232200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.1e-1965112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd++l+d+v+ +G g+W+ + r  g++R++k+c++rw ++l
  Sevir.4G232200.2.p  65 KGPWTPEEDKRLKDYVEAHGEGNWNQVQRNAGLNRCGKSCRLRWANHL 112
                         79******************************************9986 PP
2Myb_DNA-binding43.38.8e-14118161146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++ +eE +++++ + ++G++ W++ a++++ gRt++++k++w++
  Sevir.4G232200.2.p 118 KGPFDAEEVDKIIKFHMMWGNK-WAKMASHLP-GRTDNEIKNYWNT 161
                         799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.82960116IPR017930Myb domain
SuperFamilySSF466892.94E-3062159IPR009057Homeodomain-like
SMARTSM007172.6E-1664114IPR001005SANT/Myb domain
PfamPF002493.1E-1765112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2466119IPR009057Homeodomain-like
CDDcd001671.62E-1267112No hitNo description
PROSITE profilePS5129417.488117167IPR017930Myb domain
SMARTSM007175.4E-15117165IPR001005SANT/Myb domain
PfamPF002496.8E-13118161IPR001005SANT/Myb domain
CDDcd001671.69E-10120163No hitNo description
Gene3DG3DSA:1.10.10.601.5E-23120165IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MTVKVEQDPA LELPPNTEAG AGAEFSQPLS SGKEEEENDD DEDDETDSVG YDGAGNGGGA  60
PQLKKGPWTP EEDKRLKDYV EAHGEGNWNQ VQRNAGLNRC GKSCRLRWAN HLRPDLKKGP  120
FDAEEVDKII KFHMMWGNKW AKMASHLPGR TDNEIKNYWN TRLKRHQRAN LPLYPEHLCS  180
RVLDQDMNRH IPDESRGKKR SNELTQEKVV GMDDLVGDLM VFQHLDYGKD PVVPTNPLKR  240
HASTGDLSYV QSLDKVENFY SNDLNYVLTK SQSVPLGSAT ANGYPIFDGN PSTSGTIHRS  300
KKTGLPSFQC SSYEFSNSWL LQCPTASLIE QQLDTCIQSP ESMSSQNTGL LGEIVNKGDA  360
LDDCTKSERL FEMVFPPLGY NIVSQSNAYP MRHPSSSVIG DCEPEACLFD EIQASNSPSA  420
GKCA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27591651106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G232200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794391e-121HF679439.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB33 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965934.10.0transcription factor GAMYB
TrEMBLA0A368QX240.0A0A368QX24_SETIT; Uncharacterized protein
STRINGPavir.Da00534.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.12e-58myb domain protein 33